Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NOL8P1-201ENST00000508336 3529 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.31□□□□□ -1.56
COL4A4P53420 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 AC018695.5-201ENST00000605872 315 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AL031658.2-201ENST00000616850 651 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC021106.3-201ENST00000623925 531 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
COL4A4P53420 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
COL4A4P53420 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.3□□□□□ -1.56
COL4A4P53420 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
COL4A4P53420 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A4P53420 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A4P53420 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A4P53420 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A4P53420 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
COL4A4P53420 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A4P53420 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
COL4A4P53420 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A4P53420 MIR133A2-201ENST00000347538 102 ntBASIC5.3□□□□□ -1.56
COL4A4P53420 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.3□□□□□ -1.56
COL4A4P53420 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.3□□□□□ -1.56
COL4A4P53420 CYCSP11-201ENST00000436426 315 ntBASIC5.3□□□□□ -1.56
COL4A4P53420 RN7SL443P-201ENST00000464331 290 ntBASIC5.3□□□□□ -1.56
COL4A4P53420 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.3□□□□□ -1.56
COL4A4P53420 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.3□□□□□ -1.56
COL4A4P53420 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.3□□□□□ -1.56
COL4A4P53420 MIR92B-201ENST00000607575 96 ntBASIC5.3□□□□□ -1.56
COL4A4P53420 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A4P53420 FTO-223ENST00000640179 210 ntTSL 5 BASIC5.3□□□□□ -1.56
COL4A4P53420 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A4P53420 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A4P53420 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 TRIM51GP-201ENST00000534741 1350 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.29□□□□□ -1.56
COL4A4P53420 MFSD8-220ENST00000641243 1422 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 AL021877.2-201ENST00000624442 10684 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 RN7SKP227-201ENST00000364445 330 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC5.29□□□□□ -1.56
COL4A4P53420 ATP5HP3-201ENST00000396994 486 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 AL021331.1-201ENST00000402817 582 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 SNORA11.2-201ENST00000408318 127 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 RPL31-204ENST00000409038 817 ntTSL 2 BASIC5.29□□□□□ -1.56
COL4A4P53420 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.29□□□□□ -1.56
COL4A4P53420 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 OR2A3P-201ENST00000493774 953 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 AC093815.1-201ENST00000508637 280 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
COL4A4P53420 DHX9P1-201ENST00000436565 3076 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.29□□□□□ -1.56
COL4A4P53420 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.29□□□□□ -1.56
COL4A4P53420 TTC41P-205ENST00000551270 3963 ntBASIC5.29□□□□□ -1.56
COL4A4P53420 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL4A4P53420 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
COL4A4P53420 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 RNA5SP223-201ENST00000365174 120 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
COL4A4P53420 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
COL4A4P53420 Z97832.1-201ENST00000402490 328 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AL035079.1-201ENST00000405210 287 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AL390316.1-201ENST00000406279 553 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AF186996.5-201ENST00000418098 904 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AL389915.1-201ENST00000422463 466 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AL136455.1-201ENST00000441083 1240 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 CDC27P1-201ENST00000445384 715 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.28□□□□□ -1.56
COL4A4P53420 AL691482.1-201ENST00000453255 87 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 Z95152.1-201ENST00000453556 656 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.28□□□□□ -1.56
COL4A4P53420 AK3P4-201ENST00000504283 583 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AC084824.1-201ENST00000550917 1005 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AC023575.1-201ENST00000580510 358 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AC008782.1-201ENST00000603386 430 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.28□□□□□ -1.56
COL4A4P53420 MIR6853-201ENST00000619642 74 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms