Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 Y_RNA.18-201ENST00000362461 102 ntBASIC6.83□□□□□ -1.32
LIG3P49916 Y_RNA.359-201ENST00000365498 102 ntBASIC6.83□□□□□ -1.32
LIG3P49916 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 Y_RNA.516-201ENST00000384541 124 ntBASIC6.83□□□□□ -1.32
LIG3P49916 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
LIG3P49916 ATP5F1P4-201ENST00000397288 746 ntBASIC6.83□□□□□ -1.32
LIG3P49916 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 MIR1266-201ENST00000408125 84 ntBASIC6.83□□□□□ -1.32
LIG3P49916 RN7SKP205-201ENST00000410999 307 ntBASIC6.83□□□□□ -1.32
LIG3P49916 TPMTP3-201ENST00000411928 735 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AC116036.1-201ENST00000412199 367 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC6.83□□□□□ -1.32
LIG3P49916 RNGTTP1-201ENST00000420965 728 ntBASIC6.83□□□□□ -1.32
LIG3P49916 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 RPL7P44-201ENST00000424827 742 ntBASIC6.83□□□□□ -1.32
LIG3P49916 RPL23AP4-201ENST00000427757 463 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AP001324.1-201ENST00000428553 399 ntBASIC6.83□□□□□ -1.32
LIG3P49916 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 AL590128.1-201ENST00000433407 286 ntBASIC6.83□□□□□ -1.32
LIG3P49916 USP9YP35-201ENST00000435696 412 ntBASIC6.83□□□□□ -1.32
LIG3P49916 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC6.83□□□□□ -1.32
LIG3P49916 AC234771.4-201ENST00000441416 730 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 PA2G4P1-201ENST00000442248 1197 ntBASIC6.83□□□□□ -1.32
LIG3P49916 IGBP1P3-201ENST00000447449 1000 ntBASIC6.83□□□□□ -1.32
LIG3P49916 RPL23AP28-201ENST00000448062 470 ntBASIC6.83□□□□□ -1.32
LIG3P49916 MGAT2P1-201ENST00000449718 797 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AC073476.1-201ENST00000452854 407 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AC022080.2-201ENST00000452932 533 ntBASIC6.83□□□□□ -1.32
LIG3P49916 NPM1P9-201ENST00000453156 844 ntBASIC6.83□□□□□ -1.32
LIG3P49916 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 PNPLA4P1-201ENST00000458328 305 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AC072039.1-201ENST00000477611 581 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AC116337.2-201ENST00000477662 156 ntBASIC6.83□□□□□ -1.32
LIG3P49916 RN7SL70P-201ENST00000478322 302 ntBASIC6.83□□□□□ -1.32
LIG3P49916 RPL5P33-201ENST00000487833 905 ntBASIC6.83□□□□□ -1.32
LIG3P49916 RN7SL561P-201ENST00000488553 281 ntBASIC6.83□□□□□ -1.32
LIG3P49916 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC6.83□□□□□ -1.32
LIG3P49916 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 ATP1B1P1-201ENST00000509767 915 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC6.83□□□□□ -1.32
LIG3P49916 MINOS1P4-201ENST00000515470 318 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC6.83□□□□□ -1.32
LIG3P49916 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.83□□□□□ -1.32
LIG3P49916 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC6.83□□□□□ -1.32
LIG3P49916 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 AP006587.5-201ENST00000532033 739 ntBASIC6.83□□□□□ -1.32
LIG3P49916 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 AC245505.1-201ENST00000556398 224 ntBASIC6.83□□□□□ -1.32
LIG3P49916 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 AC008507.1-201ENST00000587506 734 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AL953862.2-201ENST00000603089 820 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AL590032.1-201ENST00000604920 252 ntBASIC6.83□□□□□ -1.32
LIG3P49916 RNU6-84P-201ENST00000607737 102 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AL513477.2-201ENST00000607858 568 ntBASIC6.83□□□□□ -1.32
LIG3P49916 AL603839.4-201ENST00000624658 1005 ntBASIC6.83□□□□□ -1.32
LIG3P49916 MAPK6PS3-201ENST00000403865 2162 ntBASIC6.83□□□□□ -1.32
LIG3P49916 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 AC004014.2-201ENST00000623718 5122 ntBASIC6.83□□□□□ -1.32
LIG3P49916 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 AC090220.1-201ENST00000593078 1699 ntBASIC6.83□□□□□ -1.32
LIG3P49916 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 ANKRD36BP1-202ENST00000604892 1417 ntBASIC6.83□□□□□ -1.32
LIG3P49916 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
LIG3P49916 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.82□□□□□ -1.32
LIG3P49916 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
LIG3P49916 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
LIG3P49916 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 RN7SKP237-201ENST00000364663 301 ntBASIC6.82□□□□□ -1.32
LIG3P49916 Y_RNA.311-201ENST00000365068 96 ntBASIC6.82□□□□□ -1.32
LIG3P49916 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 SPATA20P1-201ENST00000423089 438 ntBASIC6.82□□□□□ -1.32
LIG3P49916 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
LIG3P49916 GAPDHP57-201ENST00000424400 585 ntBASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms