Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.83□□□□□ -1.64
LIM2P55344 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.83□□□□□ -1.64
LIM2P55344 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.83□□□□□ -1.64
LIM2P55344 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.83□□□□□ -1.64
LIM2P55344 AC023389.2-201ENST00000580031 955 ntBASIC4.83□□□□□ -1.64
LIM2P55344 AL121612.2-201ENST00000612261 482 ntBASIC4.83□□□□□ -1.64
LIM2P55344 AL139407.1-201ENST00000613826 1175 ntBASIC4.83□□□□□ -1.64
LIM2P55344 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
LIM2P55344 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.83□□□□□ -1.64
LIM2P55344 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
LIM2P55344 AL731532.2-201ENST00000623542 1953 ntBASIC4.83□□□□□ -1.64
LIM2P55344 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
LIM2P55344 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.83□□□□□ -1.64
LIM2P55344 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
LIM2P55344 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIM2P55344 SCARNA15-201ENST00000607520 4325 ntBASIC4.83□□□□□ -1.64
LIM2P55344 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIM2P55344 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIM2P55344 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.83□□□□□ -1.64
LIM2P55344 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIM2P55344 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.82□□□□□ -1.64
LIM2P55344 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIM2P55344 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.82□□□□□ -1.64
LIM2P55344 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIM2P55344 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIM2P55344 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIM2P55344 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC4.82□□□□□ -1.64
LIM2P55344 U8.4-201ENST00000363626 134 ntBASIC4.82□□□□□ -1.64
LIM2P55344 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC4.82□□□□□ -1.64
LIM2P55344 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.82□□□□□ -1.64
LIM2P55344 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.82□□□□□ -1.64
LIM2P55344 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.82□□□□□ -1.64
LIM2P55344 COX6CP13-201ENST00000428703 226 ntBASIC4.82□□□□□ -1.64
LIM2P55344 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.82□□□□□ -1.64
LIM2P55344 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.82□□□□□ -1.64
LIM2P55344 RPL7AP61-201ENST00000443410 636 ntBASIC4.82□□□□□ -1.64
LIM2P55344 CYCSP24-201ENST00000445119 316 ntBASIC4.82□□□□□ -1.64
LIM2P55344 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.82□□□□□ -1.64
LIM2P55344 KNOP1P3-201ENST00000446933 426 ntBASIC4.82□□□□□ -1.64
LIM2P55344 AC091180.1-201ENST00000462104 372 ntBASIC4.82□□□□□ -1.64
LIM2P55344 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.82□□□□□ -1.64
LIM2P55344 AC090114.3-201ENST00000479267 829 ntBASIC4.82□□□□□ -1.64
LIM2P55344 AC005412.2-201ENST00000492004 341 ntBASIC4.82□□□□□ -1.64
LIM2P55344 AC093763.2-201ENST00000505334 1223 ntBASIC4.82□□□□□ -1.64
LIM2P55344 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.82□□□□□ -1.64
LIM2P55344 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.82□□□□□ -1.64
LIM2P55344 RN7SKP260-201ENST00000516907 149 ntBASIC4.82□□□□□ -1.64
LIM2P55344 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.82□□□□□ -1.64
LIM2P55344 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.82□□□□□ -1.64
LIM2P55344 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.82□□□□□ -1.64
LIM2P55344 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.82□□□□□ -1.64
LIM2P55344 MIR3691-201ENST00000578066 90 ntBASIC4.82□□□□□ -1.64
LIM2P55344 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.82□□□□□ -1.64
LIM2P55344 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.82□□□□□ -1.64
LIM2P55344 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.82□□□□□ -1.64
LIM2P55344 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.82□□□□□ -1.64
LIM2P55344 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.82□□□□□ -1.64
LIM2P55344 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.82□□□□□ -1.64
LIM2P55344 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
LIM2P55344 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.82□□□□□ -1.64
LIM2P55344 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIM2P55344 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
LIM2P55344 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.82□□□□□ -1.64
LIM2P55344 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIM2P55344 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIM2P55344 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.81□□□□□ -1.64
LIM2P55344 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 AC005261.6-201ENST00000623072 1387 ntBASIC4.81□□□□□ -1.64
LIM2P55344 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 SNURFL-201ENST00000309296 343 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AL353625.1-202ENST00000366273 571 ntBASIC4.81□□□□□ -1.64
LIM2P55344 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 RNU1-106P-201ENST00000384382 164 ntBASIC4.81□□□□□ -1.64
LIM2P55344 RNU4-34P-201ENST00000410431 124 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 DDX39BP1-205ENST00000422507 192 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AC104333.2-201ENST00000422630 192 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.81□□□□□ -1.64
LIM2P55344 AC110749.1-201ENST00000462007 357 ntBASIC4.81□□□□□ -1.64
LIM2P55344 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.81□□□□□ -1.64
LIM2P55344 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 NPM1P52-201ENST00000518264 846 ntBASIC4.81□□□□□ -1.64
LIM2P55344 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 AP006245.2-201ENST00000522004 300 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AC022784.5-201ENST00000522241 437 ntBASIC4.81□□□□□ -1.64
LIM2P55344 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.81□□□□□ -1.64
LIM2P55344 TRAV11-201ENST00000539512 339 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AC092490.3-201ENST00000545370 572 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.81□□□□□ -1.64
LIM2P55344 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
LIM2P55344 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.81□□□□□ -1.64
LIM2P55344 OR7E18P-201ENST00000592589 702 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AC006116.3-201ENST00000592968 361 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AC018695.5-201ENST00000605872 315 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms