Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.85□□□□□ -1.31
LIG3P49916 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
LIG3P49916 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.85□□□□□ -1.31
LIG3P49916 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
LIG3P49916 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIG3P49916 AC106872.5-201ENST00000508856 1416 ntBASIC6.84□□□□□ -1.31
LIG3P49916 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
LIG3P49916 AL359091.1-201ENST00000449048 1734 ntBASIC6.84□□□□□ -1.31
LIG3P49916 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
LIG3P49916 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.84□□□□□ -1.31
LIG3P49916 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.84□□□□□ -1.31
LIG3P49916 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 MT-RNR2-201ENST00000387347 1559 ntBASIC6.84□□□□□ -1.31
LIG3P49916 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.84□□□□□ -1.31
LIG3P49916 SNORD65.1-201ENST00000390889 71 ntBASIC6.84□□□□□ -1.31
LIG3P49916 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
LIG3P49916 AL353133.1-201ENST00000407695 401 ntBASIC6.84□□□□□ -1.31
LIG3P49916 RNA5SP115-201ENST00000411160 107 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC6.84□□□□□ -1.31
LIG3P49916 MTND1P23-201ENST00000416931 372 ntBASIC6.84□□□□□ -1.31
LIG3P49916 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.84□□□□□ -1.31
LIG3P49916 OFD1P13Y-201ENST00000431179 1232 ntBASIC6.84□□□□□ -1.31
LIG3P49916 NDUFS5P5-201ENST00000437256 321 ntBASIC6.84□□□□□ -1.31
LIG3P49916 ZNF619P1-201ENST00000446539 752 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AL606490.1-201ENST00000452266 765 ntBASIC6.84□□□□□ -1.31
LIG3P49916 DDX39BP2-208ENST00000453923 258 ntBASIC6.84□□□□□ -1.31
LIG3P49916 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC6.84□□□□□ -1.31
LIG3P49916 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 AC098583.1-201ENST00000480875 255 ntBASIC6.84□□□□□ -1.31
LIG3P49916 VPS26AP1-201ENST00000483197 979 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC6.84□□□□□ -1.31
LIG3P49916 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.84□□□□□ -1.31
LIG3P49916 SNX18P23-201ENST00000510867 677 ntBASIC6.84□□□□□ -1.31
LIG3P49916 NREP-223ENST00000515855 801 ntTSL 4 BASIC6.84□□□□□ -1.31
LIG3P49916 RNA5SP318-201ENST00000516352 92 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 IGJP1-201ENST00000522682 475 ntBASIC6.84□□□□□ -1.31
LIG3P49916 OR4C2P-201ENST00000530855 1064 ntBASIC6.84□□□□□ -1.31
LIG3P49916 NPIPB14P-203ENST00000532298 987 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 AGGF1P8-201ENST00000562979 1000 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AL512347.1-201ENST00000566420 503 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC6.84□□□□□ -1.31
LIG3P49916 AC011453.2-201ENST00000603737 729 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AC067959.1-201ENST00000604334 379 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AC092354.1-201ENST00000606057 376 ntBASIC6.84□□□□□ -1.31
LIG3P49916 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
LIG3P49916 AC135068.5-201ENST00000624197 983 ntBASIC6.84□□□□□ -1.31
LIG3P49916 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC6.84□□□□□ -1.31
LIG3P49916 AC003992.1-201ENST00000635364 557 ntBASIC6.84□□□□□ -1.31
LIG3P49916 AC027559.1-201ENST00000636288 271 ntBASIC6.84□□□□□ -1.31
LIG3P49916 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.84□□□□□ -1.31
LIG3P49916 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
LIG3P49916 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIG3P49916 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.84□□□□□ -1.31
LIG3P49916 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.84□□□□□ -1.32
LIG3P49916 AC140134.1-201ENST00000511830 3544 ntBASIC6.84□□□□□ -1.32
LIG3P49916 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
LIG3P49916 AC093278.2-201ENST00000564956 2485 ntBASIC6.84□□□□□ -1.32
LIG3P49916 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.84□□□□□ -1.32
LIG3P49916 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC6.84□□□□□ -1.32
LIG3P49916 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.84□□□□□ -1.32
LIG3P49916 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC6.84□□□□□ -1.32
LIG3P49916 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
LIG3P49916 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.83□□□□□ -1.32
LIG3P49916 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.83□□□□□ -1.32
LIG3P49916 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIG3P49916 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
LIG3P49916 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms