Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6□□□□□ -1.45
BRCA1P38398 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC6□□□□□ -1.45
BRCA1P38398 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6□□□□□ -1.45
BRCA1P38398 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6□□□□□ -1.45
BRCA1P38398 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 MIR589-201ENST00000385238 99 ntBASIC6□□□□□ -1.45
BRCA1P38398 AC025750.1-201ENST00000399891 379 ntBASIC6□□□□□ -1.45
BRCA1P38398 TBCAP2-201ENST00000416175 326 ntBASIC6□□□□□ -1.45
BRCA1P38398 AC079168.2-201ENST00000453977 416 ntBASIC6□□□□□ -1.45
BRCA1P38398 AC015795.1-201ENST00000513669 327 ntBASIC6□□□□□ -1.45
BRCA1P38398 ARL6IP1P1-201ENST00000545836 610 ntBASIC6□□□□□ -1.45
BRCA1P38398 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6□□□□□ -1.45
BRCA1P38398 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC6□□□□□ -1.45
BRCA1P38398 AC093765.1-201ENST00000603758 881 ntBASIC6□□□□□ -1.45
BRCA1P38398 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC6□□□□□ -1.45
BRCA1P38398 RNF123-214ENST00000629802 207 ntTSL 5 BASIC6□□□□□ -1.45
BRCA1P38398 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC6□□□□□ -1.45
BRCA1P38398 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
BRCA1P38398 AC108751.5-201ENST00000492880 1336 ntBASIC5.99□□□□□ -1.45
BRCA1P38398 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
BRCA1P38398 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BRCA1P38398 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BRCA1P38398 AC004076.2-201ENST00000620532 3323 ntBASIC5.99□□□□□ -1.45
BRCA1P38398 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.99□□□□□ -1.45
BRCA1P38398 RPL36AP36-201ENST00000418616 301 ntBASIC5.99□□□□□ -1.45
BRCA1P38398 GLUD1P9-201ENST00000420997 1173 ntBASIC5.99□□□□□ -1.45
BRCA1P38398 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC5.99□□□□□ -1.45
BRCA1P38398 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BRCA1P38398 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.99□□□□□ -1.45
BRCA1P38398 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.99□□□□□ -1.45
BRCA1P38398 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.99□□□□□ -1.45
BRCA1P38398 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.99□□□□□ -1.45
BRCA1P38398 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC5.99□□□□□ -1.45
BRCA1P38398 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.99□□□□□ -1.45
BRCA1P38398 AC034105.4-201ENST00000568304 277 ntBASIC5.99□□□□□ -1.45
BRCA1P38398 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.99□□□□□ -1.45
BRCA1P38398 AL139124.1-201ENST00000609123 421 ntBASIC5.99□□□□□ -1.45
BRCA1P38398 AC100847.1-201ENST00000611316 481 ntBASIC5.99□□□□□ -1.45
BRCA1P38398 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.99□□□□□ -1.45
BRCA1P38398 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC5.99□□□□□ -1.45
BRCA1P38398 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BRCA1P38398 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC5.99□□□□□ -1.45
BRCA1P38398 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BRCA1P38398 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.99□□□□□ -1.45
BRCA1P38398 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BRCA1P38398 SALL4P2-201ENST00000423288 2910 ntBASIC5.99□□□□□ -1.45
BRCA1P38398 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
BRCA1P38398 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC5.99□□□□□ -1.45
BRCA1P38398 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BRCA1P38398 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
BRCA1P38398 LINC02035-201ENST00000610128 5476 ntBASIC5.99□□□□□ -1.45
BRCA1P38398 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BRCA1P38398 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC5.98□□□□□ -1.45
BRCA1P38398 RN7SKP145-201ENST00000363291 303 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 RN7SKP153-201ENST00000365026 316 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.98□□□□□ -1.45
BRCA1P38398 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.98□□□□□ -1.45
BRCA1P38398 SCAND3P1-201ENST00000439854 1060 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 YWHAZP2-201ENST00000440317 728 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.98□□□□□ -1.45
BRCA1P38398 BX842559.2-201ENST00000451418 605 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC007016.1-201ENST00000512110 244 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.98□□□□□ -1.45
BRCA1P38398 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.98□□□□□ -1.45
BRCA1P38398 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.98□□□□□ -1.45
BRCA1P38398 FAM27B-201ENST00000610601 213 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 AC012409.3-201ENST00000611343 981 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 CASC19-255ENST00000641733 1385 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 MSL3P1-202ENST00000440028 1468 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 AC097634.1-201ENST00000604491 2467 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
BRCA1P38398 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
BRCA1P38398 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.98□□□□□ -1.45
BRCA1P38398 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.98□□□□□ -1.45
BRCA1P38398 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 CASKP1-201ENST00000412870 582 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC006946.1-201ENST00000429106 328 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 RPS12P31-201ENST00000491419 398 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.98□□□□□ -1.45
BRCA1P38398 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms