Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC6.88□□□□□ -1.31
MSX1P28360 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.88□□□□□ -1.31
MSX1P28360 RNU6-583P-201ENST00000516012 92 ntBASIC6.88□□□□□ -1.31
MSX1P28360 Y_RNA.672-201ENST00000516289 104 ntBASIC6.88□□□□□ -1.31
MSX1P28360 RNU6-445P-201ENST00000516949 107 ntBASIC6.88□□□□□ -1.31
MSX1P28360 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC6.88□□□□□ -1.31
MSX1P28360 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC6.88□□□□□ -1.31
MSX1P28360 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.88□□□□□ -1.31
MSX1P28360 RBM4-213ENST00000578778 582 ntTSL 4 BASIC6.88□□□□□ -1.31
MSX1P28360 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 HMGN1P30-201ENST00000589286 268 ntBASIC6.88□□□□□ -1.31
MSX1P28360 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC6.88□□□□□ -1.31
MSX1P28360 MIR6883-201ENST00000614952 78 ntBASIC6.88□□□□□ -1.31
MSX1P28360 DLEU1_2.1-201ENST00000617920 342 ntBASIC6.88□□□□□ -1.31
MSX1P28360 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 FLJ21408-201ENST00000499939 2594 ntTSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 AL359396.1-201ENST00000623151 2376 ntBASIC6.88□□□□□ -1.31
MSX1P28360 LINC00208-201ENST00000304233 2150 ntTSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 ZFP2-205ENST00000523286 2154 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 TMEM209-206ENST00000473456 1961 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 AL391262.1-201ENST00000556558 1992 ntBASIC6.88□□□□□ -1.31
MSX1P28360 CABYR-206ENST00000463087 1792 ntAPPRIS P4 TSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 LARGE-AS1-203ENST00000438159 2618 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 ASCC1-201ENST00000317126 1501 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
MSX1P28360 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 AC087045.3-201ENST00000623046 2468 ntBASIC6.87□□□□□ -1.31
MSX1P28360 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC6.87□□□□□ -1.31
MSX1P28360 NMD3P1-201ENST00000439704 1488 ntBASIC6.87□□□□□ -1.31
MSX1P28360 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 KCNK2-203ENST00000444842 3379 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 ADAM7-203ENST00000441335 1417 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 AC127502.2-201ENST00000602663 2351 ntBASIC6.87□□□□□ -1.31
MSX1P28360 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 SLC24A1-209ENST00000537259 3983 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
MSX1P28360 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 GNG5P1-201ENST00000255500 204 ntBASIC6.87□□□□□ -1.31
MSX1P28360 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 MT-TR-201ENST00000387439 65 ntBASIC6.87□□□□□ -1.31
MSX1P28360 REG3G-203ENST00000409471 575 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 BOLA3P4-201ENST00000418151 400 ntBASIC6.87□□□□□ -1.31
MSX1P28360 OR1AA1P-201ENST00000419597 916 ntBASIC6.87□□□□□ -1.31
MSX1P28360 RPSAP1-201ENST00000421328 880 ntBASIC6.87□□□□□ -1.31
MSX1P28360 RPS27AP6-201ENST00000427962 448 ntBASIC6.87□□□□□ -1.31
MSX1P28360 Z83313.1-201ENST00000433780 718 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC244505.2-201ENST00000435089 759 ntBASIC6.87□□□□□ -1.31
MSX1P28360 RPL23AP16-201ENST00000441715 421 ntBASIC6.87□□□□□ -1.31
MSX1P28360 LINC00578-202ENST00000442937 612 ntTSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 SS18L2P1-201ENST00000445923 213 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 SLC31A1P1-201ENST00000451221 567 ntBASIC6.87□□□□□ -1.31
MSX1P28360 PSMC1P13-201ENST00000458195 985 ntBASIC6.87□□□□□ -1.31
MSX1P28360 RPS4XP19-201ENST00000460237 736 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC083798.1-201ENST00000472671 131 ntBASIC6.87□□□□□ -1.31
MSX1P28360 TRBV8-2-201ENST00000475637 270 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC023194.1-201ENST00000493084 308 ntBASIC6.87□□□□□ -1.31
MSX1P28360 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC6.87□□□□□ -1.31
MSX1P28360 AC021146.2-201ENST00000504736 556 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 IGKV1D-32-201ENST00000517449 318 ntBASIC6.87□□□□□ -1.31
MSX1P28360 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 OR7E96P-201ENST00000530816 976 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 AP001804.2-201ENST00000533932 910 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC073571.1-201ENST00000549103 475 ntTSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.87□□□□□ -1.31
MSX1P28360 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC6.87□□□□□ -1.31
MSX1P28360 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 AL359999.1-201ENST00000604513 294 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AP004247.3-201ENST00000608682 624 ntBASIC6.87□□□□□ -1.31
MSX1P28360 CCL14-202ENST00000618404 898 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 RN7SL680P-201ENST00000620379 299 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC099667.1-201ENST00000624222 469 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC231657.1-201ENST00000624313 397 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC093909.6-201ENST00000624757 775 ntBASIC6.87□□□□□ -1.31
MSX1P28360 METAP1-212ENST00000625963 147 ntTSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 AC063952.1-203ENST00000634410 658 ntBASIC6.87□□□□□ -1.31
MSX1P28360 AC100810.6-201ENST00000638068 285 ntBASIC6.87□□□□□ -1.31
MSX1P28360 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
MSX1P28360 CASC19-260ENST00000641828 2001 ntBASIC6.87□□□□□ -1.31
MSX1P28360 LINC00561-201ENST00000565815 2738 ntBASIC6.87□□□□□ -1.31
MSX1P28360 CCDC152-201ENST00000361970 3431 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC6.87□□□□□ -1.31
MSX1P28360 ARNTL2-203ENST00000311001 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms