Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC012557.3-201ENST00000626439 255 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 CLK1-201ENST00000321356 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
COL9A1P20849 ABCA4-207ENST00000536513 3740 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 ZNF92-202ENST00000357512 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 LL22NC03-63E9.3-201ENST00000407120 3111 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 RXFP2-202ENST00000380314 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 TCF7L2-209ENST00000369395 1541 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 LINC00598-208ENST00000617777 2551 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 DYNC1I1-206ENST00000457059 2393 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 MCC-209ENST00000515367 3844 ntTSL 5 BASIC7.97□□□□□ -1.13
COL9A1P20849 RBM46-202ENST00000510397 3626 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 ERCC6-208ENST00000515869 3439 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 OR5H1-202ENST00000641874 5999 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
COL9A1P20849 ADAM22-205ENST00000398209 9144 ntAPPRIS P4 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 AC087203.2-201ENST00000526502 1587 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 FBXO38-203ENST00000394370 4132 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 LIG4-204ENST00000611712 4180 ntAPPRIS P1 TSL 4 BASIC7.96□□□□□ -1.13
COL9A1P20849 UGT2B27P-201ENST00000505092 1620 ntBASIC7.96□□□□□ -1.13
COL9A1P20849 TP63-203ENST00000354600 4668 ntAPPRIS P2 TSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.13
COL9A1P20849 ZKSCAN8-202ENST00000457389 2071 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 FCRL5-201ENST00000361835 5390 ntAPPRIS P2 TSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 AMPH-202ENST00000356264 3418 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 INTS7-202ENST00000366993 3422 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 BTBD7-208ENST00000555525 2328 ntTSL 5 BASIC7.96□□□□□ -1.13
COL9A1P20849 TMEM144-216ENST00000514558 3699 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 TRIM6-203ENST00000380107 2590 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 FAXDC2-201ENST00000326080 3251 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
COL9A1P20849 MAPK10-233ENST00000515650 2394 ntTSL 5 BASIC7.96□□□□□ -1.13
COL9A1P20849 RNU6-1115P-201ENST00000362490 106 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
COL9A1P20849 AL391419.1-201ENST00000398901 1275 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC7.96□□□□□ -1.14
COL9A1P20849 RPL6P29-201ENST00000414863 865 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 AL139184.1-202ENST00000422303 222 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 DPH3P2-201ENST00000422618 250 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC7.96□□□□□ -1.14
COL9A1P20849 HMGB1P12-201ENST00000438594 598 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 AF228730.2-201ENST00000438784 848 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 SLC25A18P1-201ENST00000449385 454 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 AL935212.3-201ENST00000450729 284 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 AP003385.3-201ENST00000472498 287 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 RN7SL392P-201ENST00000473024 299 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC7.96□□□□□ -1.14
COL9A1P20849 AC107220.1-201ENST00000514347 1037 ntTSL 3 BASIC7.96□□□□□ -1.14
COL9A1P20849 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC7.96□□□□□ -1.14
COL9A1P20849 AC090572.1-201ENST00000519251 160 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC7.96□□□□□ -1.14
COL9A1P20849 IMMP1LP2-201ENST00000552954 492 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
COL9A1P20849 AC121334.2-201ENST00000605387 271 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 AC020634.1-201ENST00000608701 549 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC7.96□□□□□ -1.14
COL9A1P20849 Metazoa_SRP.108-201ENST00000621610 300 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 SLC16A12-201ENST00000371790 4617 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.14
COL9A1P20849 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
COL9A1P20849 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.14
COL9A1P20849 OR7E122P-202ENST00000641144 6171 ntBASIC7.96□□□□□ -1.14
COL9A1P20849 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
COL9A1P20849 ELF5-201ENST00000257832 2321 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL9A1P20849 BTK-201ENST00000308731 2579 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL9A1P20849 YIPF5-201ENST00000274496 3147 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL9A1P20849 AC073525.1-203ENST00000547040 2631 ntTSL 2 BASIC7.96□□□□□ -1.14
COL9A1P20849 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL9A1P20849 DCLRE1B-201ENST00000369563 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL9A1P20849 EHF-201ENST00000257831 3150 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL9A1P20849 ZNF19-201ENST00000288177 3220 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 CTNND2-205ENST00000503622 2982 ntTSL 2 BASIC7.95□□□□□ -1.14
COL9A1P20849 RGS7-202ENST00000366563 2206 ntTSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC7.95□□□□□ -1.14
COL9A1P20849 IRF1-201ENST00000245414 3579 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 LRRC66-201ENST00000343457 3327 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 GABRA1-219ENST00000638112 2818 ntAPPRIS P1 TSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 CUL4B-201ENST00000336592 3109 ntTSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC7.95□□□□□ -1.14
COL9A1P20849 ZNF35-202ENST00000396056 2661 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 PIWIL3-201ENST00000332271 3504 ntAPPRIS P2 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
COL9A1P20849 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 RFX3-202ENST00000358730 2971 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 RNU6-289P-201ENST00000364093 107 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 RNA5SP79-201ENST00000365193 109 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 Y_RNA.373-201ENST00000365600 103 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 OR52E6-202ENST00000379946 954 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 Y_RNA.447-201ENST00000384184 113 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 MIR1303-201ENST00000408625 86 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC7.95□□□□□ -1.14
COL9A1P20849 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC7.95□□□□□ -1.14
COL9A1P20849 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC7.95□□□□□ -1.14
COL9A1P20849 RPL12P16-201ENST00000431098 498 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 GAPDHP23-201ENST00000444823 993 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 HMGN1P2-201ENST00000445197 310 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC7.95□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms