Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.59□□□□□ -1.35
COL6A1P12109 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.59□□□□□ -1.35
COL6A1P12109 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 MIR223-201ENST00000385204 110 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 AC009804.1-201ENST00000400949 179 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 NPM1P37-201ENST00000403105 874 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 RN7SKP29-201ENST00000410957 272 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.59□□□□□ -1.35
COL6A1P12109 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.59□□□□□ -1.35
COL6A1P12109 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.59□□□□□ -1.35
COL6A1P12109 MTND1P20-201ENST00000430341 950 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.59□□□□□ -1.35
COL6A1P12109 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC6.59□□□□□ -1.35
COL6A1P12109 RPS7P2-201ENST00000435134 607 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC6.59□□□□□ -1.35
COL6A1P12109 RPS7P3-201ENST00000443360 580 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC6.59□□□□□ -1.35
COL6A1P12109 OR7E116P-201ENST00000448529 957 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC6.59□□□□□ -1.35
COL6A1P12109 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC6.59□□□□□ -1.35
COL6A1P12109 RN7SL172P-201ENST00000460535 303 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 OR7E157P-201ENST00000494376 911 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC6.59□□□□□ -1.35
COL6A1P12109 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC6.59□□□□□ -1.35
COL6A1P12109 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC6.59□□□□□ -1.35
COL6A1P12109 CDC42P3-201ENST00000518493 633 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 MRPS36P3-201ENST00000519284 130 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC6.59□□□□□ -1.35
COL6A1P12109 AC004825.1-201ENST00000555068 586 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.59□□□□□ -1.35
COL6A1P12109 CCDC58P3-201ENST00000590792 430 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.59□□□□□ -1.35
COL6A1P12109 AC073387.2-201ENST00000604797 784 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 LINC02211-204ENST00000642024 1070 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 AC017002.4-201ENST00000604721 1525 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.59□□□□□ -1.35
COL6A1P12109 AP001284.1-201ENST00000528393 2118 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 AC023421.1-201ENST00000590535 1785 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL6A1P12109 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL6A1P12109 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL6A1P12109 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL6A1P12109 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL6A1P12109 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL6A1P12109 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL6A1P12109 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.36
COL6A1P12109 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL6A1P12109 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6.58□□□□□ -1.36
COL6A1P12109 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
COL6A1P12109 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.58□□□□□ -1.36
COL6A1P12109 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.58□□□□□ -1.36
COL6A1P12109 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
COL6A1P12109 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
COL6A1P12109 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
COL6A1P12109 RNA5SP183-201ENST00000362452 119 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 MIR550A3-201ENST00000390735 95 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AC005042.1-201ENST00000393397 800 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 DNAJA1P1-201ENST00000425106 1187 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AL590762.4-201ENST00000425885 253 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC6.58□□□□□ -1.36
COL6A1P12109 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC6.58□□□□□ -1.36
COL6A1P12109 AL450996.1-201ENST00000445574 1202 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC6.58□□□□□ -1.36
COL6A1P12109 RPL6P5-201ENST00000445678 828 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AC004022.1-201ENST00000447766 1066 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 RPL23AP60-201ENST00000450011 454 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 AC100832.1-201ENST00000471945 383 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AL355032.1-201ENST00000472981 438 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 RN7SL583P-201ENST00000475692 287 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC6.58□□□□□ -1.36
COL6A1P12109 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC6.58□□□□□ -1.36
COL6A1P12109 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC6.58□□□□□ -1.36
COL6A1P12109 SNORA3.4-201ENST00000515969 96 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC6.58□□□□□ -1.36
COL6A1P12109 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
COL6A1P12109 NRBF2P4-201ENST00000520874 850 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.58□□□□□ -1.36
COL6A1P12109 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC6.58□□□□□ -1.36
COL6A1P12109 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 AC015720.2-201ENST00000567709 334 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 MIR3189-201ENST00000578735 73 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 RN7SL708P-201ENST00000580952 299 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC6.58□□□□□ -1.36
COL6A1P12109 AC010245.2-201ENST00000606908 1167 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AC019131.2-201ENST00000609071 870 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AC005840.5-201ENST00000619166 599 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms