Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A1P02462 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A1P02462 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A1P02462 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A1P02462 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A1P02462 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A1P02462 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC5.9□□□□□ -1.46
COL4A1P02462 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.9□□□□□ -1.47
COL4A1P02462 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 LINC00993-201ENST00000420453 540 ntBASIC5.9□□□□□ -1.47
COL4A1P02462 AC006065.1-201ENST00000422539 802 ntBASIC5.9□□□□□ -1.47
COL4A1P02462 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.9□□□□□ -1.47
COL4A1P02462 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC5.9□□□□□ -1.47
COL4A1P02462 AC068587.1-201ENST00000483613 781 ntBASIC5.9□□□□□ -1.47
COL4A1P02462 AK3P4-201ENST00000504283 583 ntBASIC5.9□□□□□ -1.47
COL4A1P02462 ENPP7P9-201ENST00000514456 627 ntBASIC5.9□□□□□ -1.47
COL4A1P02462 RN7SKP21-201ENST00000516503 220 ntBASIC5.9□□□□□ -1.47
COL4A1P02462 RN7SKP92-201ENST00000517266 244 ntBASIC5.9□□□□□ -1.47
COL4A1P02462 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.9□□□□□ -1.47
COL4A1P02462 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.9□□□□□ -1.47
COL4A1P02462 AC074050.1-201ENST00000563247 211 ntBASIC5.9□□□□□ -1.47
COL4A1P02462 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.9□□□□□ -1.47
COL4A1P02462 AL049794.2-201ENST00000616301 365 ntBASIC5.9□□□□□ -1.47
COL4A1P02462 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC5.9□□□□□ -1.47
COL4A1P02462 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A1P02462 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC5.89□□□□□ -1.47
COL4A1P02462 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.89□□□□□ -1.47
COL4A1P02462 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 IGKV7-3-201ENST00000357453 298 ntBASIC5.89□□□□□ -1.47
COL4A1P02462 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.89□□□□□ -1.47
COL4A1P02462 SCARNA9-201ENST00000530422 353 ntBASIC5.89□□□□□ -1.47
COL4A1P02462 AC009643.1-201ENST00000532030 391 ntBASIC5.89□□□□□ -1.47
COL4A1P02462 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.89□□□□□ -1.47
COL4A1P02462 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.89□□□□□ -1.47
COL4A1P02462 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.89□□□□□ -1.47
COL4A1P02462 AC010857.1-201ENST00000606398 594 ntBASIC5.89□□□□□ -1.47
COL4A1P02462 AC011944.2-201ENST00000624440 683 ntBASIC5.89□□□□□ -1.47
COL4A1P02462 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.89□□□□□ -1.47
COL4A1P02462 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A1P02462 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A1P02462 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
COL4A1P02462 Y_RNA.126-201ENST00000363382 111 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 RNA5SP515-201ENST00000364570 118 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.88□□□□□ -1.47
COL4A1P02462 AC004975.1-201ENST00000428733 208 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 OR52E3P-201ENST00000452083 936 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 AL356981.1-201ENST00000454879 684 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 RNU6-709P-201ENST00000517257 104 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A1P02462 AC018695.5-201ENST00000605872 315 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.88□□□□□ -1.47
COL4A1P02462 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A1P02462 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.88□□□□□ -1.47
COL4A1P02462 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.88□□□□□ -1.47
COL4A1P02462 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A1P02462 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A1P02462 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
COL4A1P02462 FTH1P16-201ENST00000435241 552 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A1P02462 YWHAZP2-201ENST00000440317 728 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A1P02462 RPL7AP10-201ENST00000481016 791 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A1P02462 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A1P02462 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A1P02462 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.88□□□□□ -1.47
COL4A1P02462 Z95327.3-201ENST00000610385 572 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 AC005962.2-201ENST00000611427 652 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 AC004232.3-201ENST00000622977 525 ntBASIC5.88□□□□□ -1.47
COL4A1P02462 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.88□□□□□ -1.47
COL4A1P02462 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.88□□□□□ -1.47
COL4A1P02462 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.88□□□□□ -1.47
COL4A1P02462 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A1P02462 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A1P02462 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.87□□□□□ -1.47
COL4A1P02462 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A1P02462 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A1P02462 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.87□□□□□ -1.47
COL4A1P02462 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms