Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 SMG1P6-201ENST00000532337 2930 ntBASIC6.58□□□□□ -1.36
COL3A1P02461 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
COL3A1P02461 MTHFD2P5-201ENST00000320415 844 ntBASIC6.58□□□□□ -1.36
COL3A1P02461 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.58□□□□□ -1.36
COL3A1P02461 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC6.58□□□□□ -1.36
COL3A1P02461 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC6.58□□□□□ -1.36
COL3A1P02461 AC010733.1-201ENST00000451515 401 ntBASIC6.58□□□□□ -1.36
COL3A1P02461 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.58□□□□□ -1.36
COL3A1P02461 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.58□□□□□ -1.36
COL3A1P02461 AGGF1P9-201ENST00000561884 913 ntBASIC6.58□□□□□ -1.36
COL3A1P02461 MIR3667-201ENST00000581025 74 ntBASIC6.58□□□□□ -1.36
COL3A1P02461 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.58□□□□□ -1.36
COL3A1P02461 AL391358.1-201ENST00000605342 190 ntBASIC6.58□□□□□ -1.36
COL3A1P02461 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.58□□□□□ -1.36
COL3A1P02461 AL139022.2-201ENST00000606934 443 ntBASIC6.58□□□□□ -1.36
COL3A1P02461 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
COL3A1P02461 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
COL3A1P02461 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 AC022893.2-201ENST00000564832 3296 ntBASIC6.58□□□□□ -1.36
COL3A1P02461 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.58□□□□□ -1.36
COL3A1P02461 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
COL3A1P02461 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL3A1P02461 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL3A1P02461 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
COL3A1P02461 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL3A1P02461 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC6.57□□□□□ -1.36
COL3A1P02461 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.57□□□□□ -1.36
COL3A1P02461 SAMMSON-226ENST00000642089 1582 ntBASIC6.57□□□□□ -1.36
COL3A1P02461 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
COL3A1P02461 RN7SKP103-201ENST00000363848 320 ntBASIC6.57□□□□□ -1.36
COL3A1P02461 VN1R48P-201ENST00000448149 1036 ntBASIC6.57□□□□□ -1.36
COL3A1P02461 AL672167.3-201ENST00000465951 960 ntBASIC6.57□□□□□ -1.36
COL3A1P02461 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.57□□□□□ -1.36
COL3A1P02461 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC6.57□□□□□ -1.36
COL3A1P02461 EIF4EP5-201ENST00000528228 640 ntBASIC6.57□□□□□ -1.36
COL3A1P02461 AC137768.1-201ENST00000549998 553 ntBASIC6.57□□□□□ -1.36
COL3A1P02461 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC6.57□□□□□ -1.36
COL3A1P02461 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC6.57□□□□□ -1.36
COL3A1P02461 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC6.57□□□□□ -1.36
COL3A1P02461 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC6.57□□□□□ -1.36
COL3A1P02461 AC092474.3-201ENST00000603022 568 ntBASIC6.57□□□□□ -1.36
COL3A1P02461 AC063944.3-201ENST00000609969 533 ntBASIC6.57□□□□□ -1.36
COL3A1P02461 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC6.57□□□□□ -1.36
COL3A1P02461 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC6.57□□□□□ -1.36
COL3A1P02461 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
COL3A1P02461 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL3A1P02461 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
COL3A1P02461 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL3A1P02461 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL3A1P02461 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.56□□□□□ -1.36
COL3A1P02461 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.56□□□□□ -1.36
COL3A1P02461 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.56□□□□□ -1.36
COL3A1P02461 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
COL3A1P02461 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 GCNT6-201ENST00000379591 934 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC6.56□□□□□ -1.36
COL3A1P02461 GLUD1P9-201ENST00000420997 1173 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC6.56□□□□□ -1.36
COL3A1P02461 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC6.56□□□□□ -1.36
COL3A1P02461 AP000949.1-201ENST00000438328 629 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 OR52J1P-201ENST00000450596 932 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 AL645937.3-201ENST00000453647 936 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC6.56□□□□□ -1.36
COL3A1P02461 AC128716.1-201ENST00000475129 166 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 MYL12BP2-201ENST00000503948 512 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC6.56□□□□□ -1.36
COL3A1P02461 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.56□□□□□ -1.36
COL3A1P02461 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.56□□□□□ -1.36
COL3A1P02461 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.56□□□□□ -1.36
COL3A1P02461 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC6.56□□□□□ -1.36
COL3A1P02461 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.56□□□□□ -1.36
COL3A1P02461 RN7SL690P-201ENST00000582087 240 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 ELOCP28-201ENST00000590044 317 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 AC091948.2-201ENST00000636510 279 ntBASIC6.56□□□□□ -1.36
COL3A1P02461 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.56□□□□□ -1.36
COL3A1P02461 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
COL3A1P02461 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.56□□□□□ -1.36
COL3A1P02461 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL3A1P02461 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.55□□□□□ -1.36
COL3A1P02461 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 AC008758.3-201ENST00000507003 1829 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms