Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TNFP01375 AC090142.2-201ENST00000483263 416 ntBASIC4.92□□□□□ -1.62
TNFP01375 RN7SL441P-201ENST00000492388 296 ntBASIC4.92□□□□□ -1.62
TNFP01375 RN7SL591P-201ENST00000496150 292 ntBASIC4.92□□□□□ -1.62
TNFP01375 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.92□□□□□ -1.62
TNFP01375 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.92□□□□□ -1.62
TNFP01375 TVP23CP2-201ENST00000571473 623 ntBASIC4.92□□□□□ -1.62
TNFP01375 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.92□□□□□ -1.62
TNFP01375 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TNFP01375 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
TNFP01375 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
TNFP01375 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TNFP01375 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
TNFP01375 AC008079.2-201ENST00000623543 20396 ntBASIC4.92□□□□□ -1.62
TNFP01375 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
TNFP01375 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TNFP01375 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TNFP01375 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.91□□□□□ -1.62
TNFP01375 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.91□□□□□ -1.62
TNFP01375 SAMM50P1-201ENST00000455403 1399 ntBASIC4.91□□□□□ -1.62
TNFP01375 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.91□□□□□ -1.62
TNFP01375 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 SNORA70.10-201ENST00000384515 134 ntBASIC4.91□□□□□ -1.62
TNFP01375 FABP7P2-201ENST00000429946 379 ntBASIC4.91□□□□□ -1.62
TNFP01375 RPL7P11-201ENST00000437586 658 ntBASIC4.91□□□□□ -1.62
TNFP01375 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.91□□□□□ -1.62
TNFP01375 AC063943.1-201ENST00000465434 453 ntBASIC4.91□□□□□ -1.62
TNFP01375 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.91□□□□□ -1.62
TNFP01375 AC007686.1-201ENST00000488511 463 ntBASIC4.91□□□□□ -1.62
TNFP01375 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.91□□□□□ -1.62
TNFP01375 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.91□□□□□ -1.62
TNFP01375 AC026782.2-201ENST00000510845 636 ntBASIC4.91□□□□□ -1.62
TNFP01375 AC098976.1-201ENST00000513014 541 ntBASIC4.91□□□□□ -1.62
TNFP01375 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.91□□□□□ -1.62
TNFP01375 GCSHP4-201ENST00000538792 439 ntBASIC4.91□□□□□ -1.62
TNFP01375 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.91□□□□□ -1.62
TNFP01375 AC008147.3-201ENST00000548666 354 ntBASIC4.91□□□□□ -1.62
TNFP01375 AC019322.1-201ENST00000571869 389 ntBASIC4.91□□□□□ -1.62
TNFP01375 AC022884.2-201ENST00000578535 580 ntBASIC4.91□□□□□ -1.62
TNFP01375 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.91□□□□□ -1.62
TNFP01375 AC005229.3-201ENST00000603438 323 ntBASIC4.91□□□□□ -1.62
TNFP01375 AC087283.1-201ENST00000604029 1074 ntBASIC4.91□□□□□ -1.62
TNFP01375 AC005377.1-201ENST00000605126 456 ntBASIC4.91□□□□□ -1.62
TNFP01375 MIR6820-201ENST00000611508 62 ntBASIC4.91□□□□□ -1.62
TNFP01375 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
TNFP01375 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
TNFP01375 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 AC099654.2-201ENST00000433031 1980 ntBASIC4.91□□□□□ -1.62
TNFP01375 AP000542.2-201ENST00000623199 6179 ntBASIC4.91□□□□□ -1.62
TNFP01375 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TNFP01375 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC4.91□□□□□ -1.62
TNFP01375 AC132825.1-201ENST00000463573 2247 ntBASIC4.91□□□□□ -1.62
TNFP01375 AL442128.2-201ENST00000620246 1824 ntBASIC4.9□□□□□ -1.62
TNFP01375 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
TNFP01375 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.9□□□□□ -1.62
TNFP01375 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.62
TNFP01375 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
TNFP01375 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
TNFP01375 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
TNFP01375 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
TNFP01375 AC090220.1-201ENST00000593078 1699 ntBASIC4.9□□□□□ -1.62
TNFP01375 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.9□□□□□ -1.62
TNFP01375 AC012618.3-205ENST00000637896 1496 ntBASIC4.9□□□□□ -1.62
TNFP01375 RNA5SP443-201ENST00000363083 132 ntBASIC4.9□□□□□ -1.63
TNFP01375 AC007618.1-201ENST00000366455 732 ntBASIC4.9□□□□□ -1.63
TNFP01375 RNA5SP87-201ENST00000384155 118 ntBASIC4.9□□□□□ -1.63
TNFP01375 ATP5HP3-201ENST00000396994 486 ntBASIC4.9□□□□□ -1.63
TNFP01375 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.9□□□□□ -1.63
TNFP01375 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.9□□□□□ -1.63
TNFP01375 RPS29P22-201ENST00000472363 168 ntBASIC4.9□□□□□ -1.63
TNFP01375 MRPS33P2-201ENST00000507850 322 ntBASIC4.9□□□□□ -1.63
TNFP01375 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.9□□□□□ -1.63
TNFP01375 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.9□□□□□ -1.63
TNFP01375 MIR4737-201ENST00000583979 81 ntBASIC4.9□□□□□ -1.63
TNFP01375 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.9□□□□□ -1.63
TNFP01375 MIR6748-201ENST00000610433 71 ntBASIC4.9□□□□□ -1.63
TNFP01375 AC108359.1-201ENST00000616451 1211 ntBASIC4.9□□□□□ -1.63
TNFP01375 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.9□□□□□ -1.63
TNFP01375 AC019206.1-201ENST00000621938 425 ntBASIC4.9□□□□□ -1.63
TNFP01375 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.9□□□□□ -1.63
TNFP01375 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
TNFP01375 AL450345.1-202ENST00000605741 3881 ntBASIC4.9□□□□□ -1.63
TNFP01375 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
TNFP01375 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
TNFP01375 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
TNFP01375 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
TNFP01375 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.9□□□□□ -1.63
TNFP01375 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
TNFP01375 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
TNFP01375 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
TNFP01375 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms