Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 REG1CP-206ENST00000447469 496 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 RN7SL604P-201ENST00000492589 296 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AC026688.1-201ENST00000520639 1168 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 OR4A6P-201ENST00000534364 970 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AC068831.4-201ENST00000556118 109 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AC091042.1-201ENST00000579213 173 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 MIR3124-201ENST00000582636 67 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 MIR132-201ENST00000591554 101 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 NLRP3P1-201ENST00000622303 1785 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AL035419.1-201ENST00000397037 564 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AL121977.1-201ENST00000401636 979 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 CCNB1IP1P2-201ENST00000432876 818 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 GSTM5P1-201ENST00000434751 660 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 RN7SL459P-201ENST00000481078 302 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 OR11I1P-201ENST00000486033 954 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 RNA5SP43-201ENST00000516559 110 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AP006289.1-201ENST00000538089 277 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AC092490.3-201ENST00000545370 572 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 UGP2-232ENST00000640075 567 ntTSL 5 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SAMMSON-210ENST00000641260 1308 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RPL34P27-201ENST00000428810 349 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC103968.1-201ENST00000557841 573 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 NPM1P42-201ENST00000560329 862 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AL162431.4-201ENST00000604674 411 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNA5SP191-201ENST00000362585 102 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RPL7P58-201ENST00000402913 758 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 DNAJA1P4-201ENST00000406473 1166 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNU6ATAC34P-201ENST00000408879 121 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 CNOT7P1-201ENST00000429006 852 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 NDUFB4P8-201ENST00000435351 367 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SNRPCP3-201ENST00000474888 476 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNA5SP392-201ENST00000516905 112 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC005341.1-201ENST00000571086 708 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AL121834.1-201ENST00000572284 509 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AP000919.1-201ENST00000582850 985 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 MIR6780A-201ENST00000615089 68 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 BX284613.1-201ENST00000452221 1641 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 MUC2-202ENST00000613187 4845 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 GJA6P-201ENST00000415117 1042 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 PPP2R2DP1-201ENST00000420526 637 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC058823.1-201ENST00000485315 474 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC136624.4-201ENST00000573044 370 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC053481.3-201ENST00000577881 843 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 MIR4429-201ENST00000580105 73 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AL049840.6-202ENST00000603373 279 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms