Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC138761.5-201ENST00000433967 325 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 KCTD10P1-201ENST00000434203 625 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 AC108463.1-201ENST00000450258 347 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 AC073358.1-201ENST00000505671 684 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 AC026688.1-201ENST00000520639 1168 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 AC100784.1-201ENST00000522790 310 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC6.42□□□□□ -1.38
COL18A1P39060 AC133555.2-201ENST00000550213 292 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 AC100847.1-201ENST00000611316 481 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL18A1P39060 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL18A1P39060 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL18A1P39060 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC6.42□□□□□ -1.38
COL18A1P39060 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL18A1P39060 SOCS5P3-201ENST00000425115 1576 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL18A1P39060 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL18A1P39060 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.42□□□□□ -1.38
COL18A1P39060 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL18A1P39060 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL18A1P39060 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
COL18A1P39060 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.42□□□□□ -1.38
COL18A1P39060 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL18A1P39060 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
COL18A1P39060 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.41□□□□□ -1.38
COL18A1P39060 OR1L6-202ENST00000373684 1044 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
COL18A1P39060 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.41□□□□□ -1.38
COL18A1P39060 COX6CP13-201ENST00000428703 226 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 AC091180.1-201ENST00000462104 372 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 AC091868.1-201ENST00000508746 304 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC6.41□□□□□ -1.38
COL18A1P39060 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
COL18A1P39060 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL18A1P39060 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC6.41□□□□□ -1.38
COL18A1P39060 BNIP3P5-201ENST00000562290 498 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 FTO-223ENST00000640179 210 ntTSL 5 BASIC6.41□□□□□ -1.38
COL18A1P39060 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL18A1P39060 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL18A1P39060 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC6.41□□□□□ -1.38
COL18A1P39060 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL18A1P39060 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL18A1P39060 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
COL18A1P39060 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC6.41□□□□□ -1.38
COL18A1P39060 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.41□□□□□ -1.38
COL18A1P39060 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC6.41□□□□□ -1.38
COL18A1P39060 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC6.41□□□□□ -1.38
COL18A1P39060 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.41□□□□□ -1.38
COL18A1P39060 SNX10-203ENST00000409367 746 ntTSL 5 BASIC6.41□□□□□ -1.38
COL18A1P39060 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.41□□□□□ -1.38
COL18A1P39060 RN7SL197P-201ENST00000466981 299 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 SLC25A15P5-201ENST00000508033 253 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 AL109766.1-201ENST00000555080 552 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 MIR3138-201ENST00000585238 82 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 AC093388.1-201ENST00000609166 430 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL18A1P39060 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL18A1P39060 AP000756.2-201ENST00000624168 2567 ntBASIC6.41□□□□□ -1.38
COL18A1P39060 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL18A1P39060 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
COL18A1P39060 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL18A1P39060 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.4□□□□□ -1.38
COL18A1P39060 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL18A1P39060 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.4□□□□□ -1.38
COL18A1P39060 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC6.4□□□□□ -1.38
COL18A1P39060 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC6.4□□□□□ -1.38
COL18A1P39060 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.4□□□□□ -1.38
COL18A1P39060 AC009643.2-201ENST00000603543 1448 ntBASIC6.4□□□□□ -1.38
COL18A1P39060 RNA5SP28-201ENST00000363841 119 ntBASIC6.4□□□□□ -1.38
COL18A1P39060 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.38
COL18A1P39060 LINC00993-201ENST00000420453 540 ntBASIC6.4□□□□□ -1.38
COL18A1P39060 UQCRBP1-201ENST00000421129 336 ntBASIC6.4□□□□□ -1.38
COL18A1P39060 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC6.4□□□□□ -1.38
COL18A1P39060 FHP1-201ENST00000442741 703 ntBASIC6.4□□□□□ -1.38
COL18A1P39060 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.4□□□□□ -1.38
COL18A1P39060 ENPP7P11-201ENST00000505915 627 ntBASIC6.4□□□□□ -1.38
COL18A1P39060 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
COL18A1P39060 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC6.4□□□□□ -1.38
COL18A1P39060 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.4□□□□□ -1.38
COL18A1P39060 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL18A1P39060 MIR6716-201ENST00000613413 80 ntBASIC6.4□□□□□ -1.38
COL18A1P39060 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.39
COL18A1P39060 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.4□□□□□ -1.39
COL18A1P39060 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL18A1P39060 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL18A1P39060 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL18A1P39060 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC6.4□□□□□ -1.39
COL18A1P39060 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.39□□□□□ -1.39
COL18A1P39060 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL18A1P39060 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL18A1P39060 RNA5SP509-201ENST00000364577 119 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 MIR659-201ENST00000384963 97 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 RNA5SP241-201ENST00000391326 114 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 ST13P16-201ENST00000401760 781 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.39□□□□□ -1.39
COL18A1P39060 RN7SKP17-201ENST00000411242 351 ntBASIC6.39□□□□□ -1.39
COL18A1P39060 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.39□□□□□ -1.39
COL18A1P39060 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.39□□□□□ -1.39
COL18A1P39060 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms