Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 AL592429.1-201ENST00000403909 1473 ntBASIC5.8□□□□□ -1.48
MSX2P35548 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
MSX2P35548 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
MSX2P35548 RNA5SP375-201ENST00000362975 119 ntBASIC5.8□□□□□ -1.48
MSX2P35548 RNA5SP429-201ENST00000363688 109 ntBASIC5.8□□□□□ -1.48
MSX2P35548 RN7SKP191-201ENST00000364713 306 ntBASIC5.8□□□□□ -1.48
MSX2P35548 RNA5SP302-201ENST00000364896 100 ntBASIC5.8□□□□□ -1.48
MSX2P35548 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC5.8□□□□□ -1.48
MSX2P35548 AL139100.1-201ENST00000408001 498 ntBASIC5.8□□□□□ -1.48
MSX2P35548 BTF3P8-201ENST00000414577 526 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AL133325.1-201ENST00000421090 382 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AL139184.1-202ENST00000422303 222 ntBASIC5.8□□□□□ -1.48
MSX2P35548 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
MSX2P35548 KRT8P51-201ENST00000438938 274 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX2P35548 GAPDHP23-201ENST00000444823 993 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX2P35548 AL929288.2-201ENST00000446368 407 ntBASIC5.8□□□□□ -1.48
MSX2P35548 MORF4-201ENST00000447135 971 ntBASIC5.8□□□□□ -1.48
MSX2P35548 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC5.8□□□□□ -1.48
MSX2P35548 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC5.8□□□□□ -1.48
MSX2P35548 RN7SL352P-201ENST00000466002 277 ntBASIC5.8□□□□□ -1.48
MSX2P35548 RPS3AP49-201ENST00000472161 790 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX2P35548 RPL21P42-201ENST00000488408 464 ntBASIC5.8□□□□□ -1.48
MSX2P35548 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.8□□□□□ -1.48
MSX2P35548 AC122714.1-201ENST00000502510 459 ntBASIC5.8□□□□□ -1.48
MSX2P35548 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 HPRT1P2-201ENST00000505250 544 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC010460.1-201ENST00000507087 466 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX2P35548 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.8□□□□□ -1.48
MSX2P35548 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX2P35548 DEFB130C-202ENST00000530001 230 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.8□□□□□ -1.48
MSX2P35548 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 AL049779.3-201ENST00000557141 606 ntBASIC5.8□□□□□ -1.48
MSX2P35548 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX2P35548 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX2P35548 AC090888.3-201ENST00000558917 509 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC087465.1-201ENST00000560574 245 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX2P35548 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 RN7SL426P-201ENST00000579106 295 ntBASIC5.8□□□□□ -1.48
MSX2P35548 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 VN1R88P-201ENST00000596787 292 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC5.8□□□□□ -1.48
MSX2P35548 RPS11-205ENST00000599561 430 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 AC106791.2-201ENST00000604680 391 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX2P35548 AC073114.1-201ENST00000612027 490 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC092794.1-201ENST00000612734 582 ntBASIC5.8□□□□□ -1.48
MSX2P35548 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 AL162574.1-201ENST00000615702 950 ntBASIC5.8□□□□□ -1.48
MSX2P35548 AC018755.4-201ENST00000619715 454 ntBASIC5.8□□□□□ -1.48
MSX2P35548 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
MSX2P35548 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 AL133243.2-201ENST00000610331 1621 ntBASIC5.8□□□□□ -1.48
MSX2P35548 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 UGT2B24P-201ENST00000514441 1597 ntBASIC5.8□□□□□ -1.48
MSX2P35548 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
MSX2P35548 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
MSX2P35548 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
MSX2P35548 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX2P35548 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
MSX2P35548 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 AL136984.1-201ENST00000607611 1893 ntBASIC5.79□□□□□ -1.48
MSX2P35548 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.79□□□□□ -1.48
MSX2P35548 ANKRD20A17P-201ENST00000511745 1330 ntBASIC5.79□□□□□ -1.48
MSX2P35548 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.79□□□□□ -1.48
MSX2P35548 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 AC010401.2-201ENST00000575137 4934 ntBASIC5.79□□□□□ -1.48
MSX2P35548 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 AC027514.1-201ENST00000588561 1603 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AC079298.1-201ENST00000625026 1619 ntBASIC5.79□□□□□ -1.48
MSX2P35548 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSX2P35548 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 MICG-208ENST00000416822 132 ntBASIC5.79□□□□□ -1.48
MSX2P35548 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.79□□□□□ -1.48
MSX2P35548 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.79□□□□□ -1.48
MSX2P35548 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms