Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 U3.3-201ENST00000362986 216 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 SNORA2.3-201ENST00000383920 135 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.26□□□□□ -1.73
SDCBPO00560 AL121776.1-201ENST00000429337 372 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.26□□□□□ -1.73
SDCBPO00560 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC4.26□□□□□ -1.73
SDCBPO00560 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.26□□□□□ -1.73
SDCBPO00560 RPL7P6-201ENST00000480903 738 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 AC090686.1-201ENST00000481577 749 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 AC015864.1-201ENST00000496512 544 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.26□□□□□ -1.73
SDCBPO00560 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 IGLVIV-64-201ENST00000518581 301 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 RPL23AP53-201ENST00000521854 457 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 HNRNPRP2-201ENST00000528421 743 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 AC027026.1-201ENST00000532323 742 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.26□□□□□ -1.73
SDCBPO00560 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 AP005262.1-201ENST00000582646 997 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.26□□□□□ -1.73
SDCBPO00560 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.26□□□□□ -1.73
SDCBPO00560 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.26□□□□□ -1.73
SDCBPO00560 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 NEAT1-202ENST00000501122 22743 ntBASIC4.26□□□□□ -1.73
SDCBPO00560 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.26□□□□□ -1.73
SDCBPO00560 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SDCBPO00560 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDCBPO00560 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.26□□□□□ -1.73
SDCBPO00560 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
SDCBPO00560 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 AL359643.1-201ENST00000404109 423 ntBASIC4.25□□□□□ -1.73
SDCBPO00560 RPL35AP24-201ENST00000413846 330 ntBASIC4.25□□□□□ -1.73
SDCBPO00560 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 AC138938.1-201ENST00000515431 782 ntBASIC4.25□□□□□ -1.73
SDCBPO00560 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.25□□□□□ -1.73
SDCBPO00560 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.25□□□□□ -1.73
SDCBPO00560 FKBP1AP1-201ENST00000594588 318 ntBASIC4.25□□□□□ -1.73
SDCBPO00560 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.25□□□□□ -1.73
SDCBPO00560 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.25□□□□□ -1.73
SDCBPO00560 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 MIR8069-1-201ENST00000616627 86 ntBASIC4.25□□□□□ -1.73
SDCBPO00560 MIR8069-2-201ENST00000621412 86 ntBASIC4.25□□□□□ -1.73
SDCBPO00560 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.25□□□□□ -1.73
SDCBPO00560 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 AC073869.7-201ENST00000640874 297 ntBASIC4.25□□□□□ -1.73
SDCBPO00560 CASC19-264ENST00000641912 1184 ntBASIC4.25□□□□□ -1.73
SDCBPO00560 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.25□□□□□ -1.73
SDCBPO00560 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.25□□□□□ -1.73
SDCBPO00560 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.25□□□□□ -1.73
SDCBPO00560 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.25□□□□□ -1.73
SDCBPO00560 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SDCBPO00560 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
SDCBPO00560 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.24□□□□□ -1.73
SDCBPO00560 AC011493.1-201ENST00000596753 1632 ntBASIC4.24□□□□□ -1.73
SDCBPO00560 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
SDCBPO00560 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SDCBPO00560 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SDCBPO00560 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.24□□□□□ -1.73
SDCBPO00560 RN7SKP113-201ENST00000363891 295 ntBASIC4.24□□□□□ -1.73
SDCBPO00560 AC005522.1-201ENST00000395416 346 ntBASIC4.24□□□□□ -1.73
SDCBPO00560 RN7SKP97-201ENST00000410966 333 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms