Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 OR9N1P-201ENST00000491296 333 ntBASIC5.08□□□□□ -1.6
PDLIM1O00151 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.08□□□□□ -1.6
PDLIM1O00151 AC147055.1-201ENST00000509261 750 ntBASIC5.08□□□□□ -1.6
PDLIM1O00151 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM1O00151 SCARNA6.1-201ENST00000516989 238 ntBASIC5.08□□□□□ -1.6
PDLIM1O00151 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM1O00151 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM1O00151 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.08□□□□□ -1.6
PDLIM1O00151 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.08□□□□□ -1.6
PDLIM1O00151 AP001496.3-201ENST00000580230 913 ntBASIC5.08□□□□□ -1.6
PDLIM1O00151 H3F3BP2-201ENST00000583907 357 ntBASIC5.08□□□□□ -1.6
PDLIM1O00151 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM1O00151 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM1O00151 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.08□□□□□ -1.6
PDLIM1O00151 AC097505.1-201ENST00000610199 565 ntBASIC5.08□□□□□ -1.6
PDLIM1O00151 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.08□□□□□ -1.6
PDLIM1O00151 AC131238.1-201ENST00000617135 328 ntBASIC5.08□□□□□ -1.6
PDLIM1O00151 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
PDLIM1O00151 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.08□□□□□ -1.6
PDLIM1O00151 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
PDLIM1O00151 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.08□□□□□ -1.6
PDLIM1O00151 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM1O00151 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM1O00151 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
PDLIM1O00151 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PDLIM1O00151 DDX18P3-201ENST00000404856 2007 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
PDLIM1O00151 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM1O00151 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.07□□□□□ -1.6
PDLIM1O00151 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM1O00151 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM1O00151 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
PDLIM1O00151 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM1O00151 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM1O00151 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
PDLIM1O00151 RN7SKP104-201ENST00000362605 328 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 RNA5SP394-201ENST00000364216 119 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM1O00151 AL160275.2-201ENST00000412010 394 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.07□□□□□ -1.6
PDLIM1O00151 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.07□□□□□ -1.6
PDLIM1O00151 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.07□□□□□ -1.6
PDLIM1O00151 MTND6P18-201ENST00000439477 513 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.07□□□□□ -1.6
PDLIM1O00151 AL358876.1-201ENST00000453364 1075 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 RPSAP37-201ENST00000470913 821 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 AC022215.1-201ENST00000481770 362 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 RPS3AP15-201ENST00000483874 781 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 PPIAP19-201ENST00000486414 492 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 RPS12P31-201ENST00000491419 398 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 HMGB3P14-201ENST00000494195 599 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 RPL15P21-201ENST00000495592 567 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM1O00151 PPM1AP1-201ENST00000502740 1135 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.07□□□□□ -1.6
PDLIM1O00151 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.07□□□□□ -1.6
PDLIM1O00151 UGT2A3P7-201ENST00000510485 734 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.07□□□□□ -1.6
PDLIM1O00151 AC022784.5-201ENST00000522241 437 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.07□□□□□ -1.6
PDLIM1O00151 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC5.07□□□□□ -1.6
PDLIM1O00151 AC011840.5-201ENST00000582125 771 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 AC008521.2-201ENST00000591021 259 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 RPL26P30-202ENST00000602923 645 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 AC138473.1-201ENST00000605717 526 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 uc_338.18-201ENST00000615451 175 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 BX005214.3-202ENST00000619809 325 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 AC127024.6-201ENST00000621598 424 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 MIR193BHG-214ENST00000641765 509 ntBASIC5.07□□□□□ -1.6
PDLIM1O00151 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
PDLIM1O00151 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
PDLIM1O00151 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
PDLIM1O00151 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.06□□□□□ -1.6
PDLIM1O00151 AC097461.1-201ENST00000568928 2821 ntBASIC5.06□□□□□ -1.6
PDLIM1O00151 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.06□□□□□ -1.6
PDLIM1O00151 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM1O00151 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
PDLIM1O00151 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.06□□□□□ -1.6
PDLIM1O00151 HMGB1P20-201ENST00000402555 677 ntBASIC5.06□□□□□ -1.6
PDLIM1O00151 AL139039.2-201ENST00000407436 479 ntBASIC5.06□□□□□ -1.6
PDLIM1O00151 AC073136.2-201ENST00000417282 849 ntBASIC5.06□□□□□ -1.6
PDLIM1O00151 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.06□□□□□ -1.6
PDLIM1O00151 RPL12P43-201ENST00000420608 499 ntBASIC5.06□□□□□ -1.6
PDLIM1O00151 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.06□□□□□ -1.6
PDLIM1O00151 HMGB3P24-201ENST00000433260 622 ntBASIC5.06□□□□□ -1.6
PDLIM1O00151 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.06□□□□□ -1.6
PDLIM1O00151 HMGN1P36-201ENST00000446623 298 ntBASIC5.06□□□□□ -1.6
PDLIM1O00151 RPS27AP2-201ENST00000457576 465 ntBASIC5.06□□□□□ -1.6
PDLIM1O00151 AC098583.1-201ENST00000480875 255 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms