Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 MIR449B-201ENST00000384995 97 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AC233289.1-201ENST00000403700 508 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 PPIAP9-201ENST00000403866 498 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 ARL4AP5-201ENST00000404372 599 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 ARL4AP4-201ENST00000434170 518 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AC119751.5-201ENST00000514077 770 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 SLMAP-203ENST00000383718 6749 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 AL139095.3-201ENST00000419672 1203 ntBASIC4.74□□□□□ -1.65
VPS13AQ96RL7 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 AC005858.4-201ENST00000623191 700 ntBASIC4.74□□□□□ -1.65
VPS13AQ96RL7 AC090017.1-201ENST00000548612 1779 ntBASIC4.74□□□□□ -1.65
VPS13AQ96RL7 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 OR7E122P-202ENST00000641144 6171 ntBASIC4.74□□□□□ -1.65
VPS13AQ96RL7 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 OR13Z1P-201ENST00000416141 834 ntBASIC4.74□□□□□ -1.65
VPS13AQ96RL7 RPL7AP25-201ENST00000423357 805 ntBASIC4.74□□□□□ -1.65
VPS13AQ96RL7 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 AC010547.7-201ENST00000570323 333 ntBASIC4.74□□□□□ -1.65
VPS13AQ96RL7 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 BCOR-203ENST00000378455 6338 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS13AQ96RL7 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AC012442.3-202ENST00000636742 206 ntBASIC4.73□□□□□ -1.65
VPS13AQ96RL7 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 OR5P1P-201ENST00000299512 925 ntBASIC4.73□□□□□ -1.65
VPS13AQ96RL7 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AC245028.2-201ENST00000458673 253 ntBASIC4.73□□□□□ -1.65
VPS13AQ96RL7 RN7SL98P-201ENST00000462271 300 ntBASIC4.73□□□□□ -1.65
VPS13AQ96RL7 FTH1P21-201ENST00000512179 511 ntBASIC4.73□□□□□ -1.65
VPS13AQ96RL7 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AL672167.2-201ENST00000377164 879 ntBASIC4.73□□□□□ -1.65
VPS13AQ96RL7 HSFY1P1-201ENST00000423928 1178 ntBASIC4.73□□□□□ -1.65
VPS13AQ96RL7 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AC107016.1-201ENST00000550463 337 ntBASIC4.73□□□□□ -1.65
VPS13AQ96RL7 AP005901.4-201ENST00000577336 569 ntBASIC4.73□□□□□ -1.65
VPS13AQ96RL7 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS13AQ96RL7 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 H3F3BP1-201ENST00000440551 403 ntBASIC4.72□□□□□ -1.65
VPS13AQ96RL7 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 MIR3200-201ENST00000580767 85 ntBASIC4.72□□□□□ -1.65
VPS13AQ96RL7 AL356863.1-201ENST00000623378 1080 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 242.2 ms