Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC138915.4-201ENST00000565549 4147 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 CDY7P-201ENST00000429883 1604 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 TMC3-AS1-206ENST00000612811 2726 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AP002001.2-201ENST00000529025 1469 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 MED6-212ENST00000615788 1700 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 GOT2P1-201ENST00000440922 1309 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 ANKRD62P1-201ENST00000434304 1623 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 OR11H4-201ENST00000315409 1082 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 RNY4P34-201ENST00000364779 95 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 FCF1P10-201ENST00000407590 479 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC090617.1-201ENST00000413674 323 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 RPSAP1-201ENST00000421328 880 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AL513174.1-201ENST00000423182 629 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 NPM1P24-201ENST00000428039 894 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 RPL36P19-201ENST00000430744 301 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 BTF3P10-201ENST00000433415 495 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 ELOCP10-201ENST00000440624 327 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 RPL7P36-201ENST00000444633 681 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 CYCSP44-201ENST00000448560 313 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 VDAC2P4-201ENST00000452925 711 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 Z82190.1-201ENST00000454534 490 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 RPSAP7-201ENST00000456871 885 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 MTCO1P42-201ENST00000457379 726 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 RPL7AP10-201ENST00000481016 791 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 TMEM251P1-201ENST00000503717 318 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 snoU109.6-201ENST00000516831 118 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 ATP5J2P4-201ENST00000538774 267 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC121758.1-202ENST00000556917 658 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AL133457.1-201ENST00000564251 987 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 MIR4470-201ENST00000583453 72 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AL589765.5-201ENST00000596133 515 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AP000907.4-201ENST00000604143 237 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 ELOCP34-201ENST00000604436 327 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AL136139.1-201ENST00000605568 222 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC023813.4-201ENST00000607580 580 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC211433.3-201ENST00000623770 375 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 CASC19-212ENST00000641153 1287 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AP003119.3-201ENST00000566747 4192 ntBASIC5.57□□□□□ -1.52
CCDC140Q96MF4 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC140Q96MF4 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms