Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 SNORA27.3-201ENST00000364937 134 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 MIR550A3-201ENST00000390735 95 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 HSPA8P15-201ENST00000401676 786 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 TRIM60P17-201ENST00000415181 719 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC092754.1-201ENST00000472975 479 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 RPL7P40-201ENST00000481703 745 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC012123.2-201ENST00000485809 248 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC002456.2-201ENST00000509356 380 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 GAPDHP62-201ENST00000515313 990 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AP000676.2-201ENST00000529711 301 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC127381.1-201ENST00000555979 939 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 ADAD1P2-201ENST00000588476 646 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 LSM1P2-201ENST00000604911 322 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC116651.1-201ENST00000609724 556 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 LINC01739-205ENST00000641890 573 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC116158.1-201ENST00000560231 2129 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC114947.2-201ENST00000565748 2125 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 AC002525.1-201ENST00000624392 1622 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.74□□□□□ -1.49
USP41Q3LFD5 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC079809.1-201ENST00000415468 276 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC093162.1-201ENST00000419682 124 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 AL590762.4-201ENST00000425885 253 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 MTND6P5-201ENST00000448266 512 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 RPL31P20-201ENST00000449593 360 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 GAPDHP14-201ENST00000450472 937 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 BX284632.1-201ENST00000478218 541 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 RPSAP51-201ENST00000497462 645 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 NDUFB5P1-201ENST00000508134 564 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 RNA5SP230-201ENST00000517039 122 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 OR4V1P-201ENST00000525394 1140 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC024940.3-201ENST00000538551 316 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 YWHABP2-201ENST00000540201 713 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC074029.2-201ENST00000551045 634 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 AC133644.2-201ENST00000608142 540 ntBASIC5.73□□□□□ -1.49
USP41Q3LFD5 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.73□□□□□ -1.49
USP41Q3LFD5 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP41Q3LFD5 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms