Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 HSPD1P14-201ENST00000432666 1618 ntBASIC4.71□□□□□ -1.66
HOXA1P49639 PSG10P-201ENST00000501199 1500 ntBASIC4.71□□□□□ -1.66
HOXA1P49639 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
HOXA1P49639 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXA1P49639 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA1P49639 AC093909.5-201ENST00000621839 1799 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AL022393.1-201ENST00000625142 1677 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA1P49639 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
HOXA1P49639 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
HOXA1P49639 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA1P49639 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HOXA1P49639 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 RNU6-252P-201ENST00000363232 107 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
HOXA1P49639 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 OR13C3-201ENST00000374781 1108 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 RNU6-354P-201ENST00000383862 107 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 RNU6-610P-201ENST00000384264 107 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 RN7SKP199-201ENST00000410325 305 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 MTCO2P8-201ENST00000412213 658 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AL158825.1-201ENST00000414735 521 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 Z82198.3-201ENST00000421145 199 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 VN1R21P-201ENST00000426703 765 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 MED6P1-201ENST00000439659 713 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 TRIM60P16-201ENST00000444048 694 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA1P49639 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 OR52E3P-201ENST00000452083 936 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC004890.1-201ENST00000461005 181 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 RPL5P13-201ENST00000462840 709 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 AC010374.1-201ENST00000503762 1237 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 RNA5SP96-201ENST00000516041 107 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 SEPT10P1-201ENST00000517342 1162 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA1P49639 AC139697.1-201ENST00000548429 745 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC126615.2-201ENST00000553003 515 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 MIR3157-201ENST00000578688 85 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 RN7SL230P-201ENST00000580835 303 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 AC006116.5-201ENST00000591936 559 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA1P49639 NDUFB9P1-201ENST00000604683 510 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AP004372.1-201ENST00000604842 844 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HOXA1P49639 AL021918.2-201ENST00000613415 194 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC025574.2-201ENST00000615621 514 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AL512427.1-201ENST00000618593 349 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 AC015871.5-202ENST00000623252 701 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 ATM-229ENST00000639953 587 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HOXA1P49639 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
HOXA1P49639 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
HOXA1P49639 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA1P49639 LINC01613-201ENST00000561476 2780 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 GNL2P1-201ENST00000451274 2190 ntBASIC4.7□□□□□ -1.66
HOXA1P49639 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA1P49639 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXA1P49639 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
HOXA1P49639 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA1P49639 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA1P49639 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXA1P49639 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.69□□□□□ -1.66
HOXA1P49639 AC079298.1-201ENST00000625026 1619 ntBASIC4.69□□□□□ -1.66
HOXA1P49639 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA1P49639 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXA1P49639 RAD1P1-201ENST00000231383 813 ntBASIC4.69□□□□□ -1.66
HOXA1P49639 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA1P49639 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms