Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC021106.1-201ENST00000509020 1058 ntBASIC4.98□□□□□ -1.61
SOX3P41225 AC091912.1-201ENST00000511351 248 ntBASIC4.98□□□□□ -1.61
SOX3P41225 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.98□□□□□ -1.61
SOX3P41225 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.98□□□□□ -1.61
SOX3P41225 CDC42P3-201ENST00000518493 633 ntBASIC4.98□□□□□ -1.61
SOX3P41225 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.98□□□□□ -1.61
SOX3P41225 AC005000.1-201ENST00000536192 288 ntBASIC4.98□□□□□ -1.61
SOX3P41225 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.98□□□□□ -1.61
SOX3P41225 LSM3P2-201ENST00000551246 273 ntBASIC4.98□□□□□ -1.61
SOX3P41225 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.98□□□□□ -1.61
SOX3P41225 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC4.98□□□□□ -1.61
SOX3P41225 AC005341.1-201ENST00000571086 708 ntBASIC4.98□□□□□ -1.61
SOX3P41225 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.98□□□□□ -1.61
SOX3P41225 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.98□□□□□ -1.61
SOX3P41225 AC009237.13-201ENST00000603193 276 ntBASIC4.98□□□□□ -1.61
SOX3P41225 SDR42E1P1-201ENST00000611327 477 ntBASIC4.98□□□□□ -1.61
SOX3P41225 AC091932.2-201ENST00000623014 291 ntBASIC4.98□□□□□ -1.61
SOX3P41225 AC073869.8-201ENST00000641806 335 ntBASIC4.98□□□□□ -1.61
SOX3P41225 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SOX3P41225 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.98□□□□□ -1.61
SOX3P41225 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SOX3P41225 AC003973.3-201ENST00000624863 2822 ntBASIC4.98□□□□□ -1.61
SOX3P41225 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.98□□□□□ -1.61
SOX3P41225 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SOX3P41225 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SOX3P41225 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 OFD1P8Y-201ENST00000449148 1433 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AL590763.1-201ENST00000398297 1545 ntBASIC4.97□□□□□ -1.61
SOX3P41225 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 THAP12P5-201ENST00000405864 2275 ntBASIC4.97□□□□□ -1.61
SOX3P41225 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 CR382285.2-201ENST00000624662 1495 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AC005261.6-201ENST00000623072 1387 ntBASIC4.97□□□□□ -1.61
SOX3P41225 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SOX3P41225 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SOX3P41225 AC005294.1-201ENST00000355509 281 ntBASIC4.97□□□□□ -1.61
SOX3P41225 RNU6-697P-201ENST00000363348 107 ntBASIC4.97□□□□□ -1.61
SOX3P41225 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 RNU6-883P-201ENST00000384597 107 ntBASIC4.97□□□□□ -1.61
SOX3P41225 RNU1-149P-201ENST00000390870 161 ntBASIC4.97□□□□□ -1.61
SOX3P41225 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
SOX3P41225 AL589655.1-201ENST00000405398 482 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.97□□□□□ -1.61
SOX3P41225 RN7SKP278-201ENST00000410504 342 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AC098592.2-201ENST00000413158 265 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.97□□□□□ -1.61
SOX3P41225 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.97□□□□□ -1.61
SOX3P41225 CR848007.2-201ENST00000424918 787 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AL445528.1-201ENST00000426330 420 ntBASIC4.97□□□□□ -1.61
SOX3P41225 NANOGP4-201ENST00000427230 913 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.97□□□□□ -1.61
SOX3P41225 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.97□□□□□ -1.61
SOX3P41225 RN7SL799P-201ENST00000475891 298 ntBASIC4.97□□□□□ -1.61
SOX3P41225 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 RNU6-941P-201ENST00000516346 108 ntBASIC4.97□□□□□ -1.61
SOX3P41225 RNA5SP92-201ENST00000516437 110 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.97□□□□□ -1.61
SOX3P41225 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.97□□□□□ -1.61
SOX3P41225 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.97□□□□□ -1.61
SOX3P41225 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.97□□□□□ -1.61
SOX3P41225 RPL10P14-201ENST00000565265 298 ntBASIC4.97□□□□□ -1.61
SOX3P41225 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 PRPF19P1-201ENST00000584766 898 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.97□□□□□ -1.61
SOX3P41225 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
SOX3P41225 OR7E18P-201ENST00000592589 702 ntBASIC4.97□□□□□ -1.61
SOX3P41225 AC010487.1-201ENST00000594408 1172 ntBASIC4.97□□□□□ -1.61
SOX3P41225 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.97□□□□□ -1.61
SOX3P41225 AL356094.1-201ENST00000624663 1212 ntBASIC4.97□□□□□ -1.61
SOX3P41225 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.97□□□□□ -1.61
SOX3P41225 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 AC100757.1-201ENST00000616872 1835 ntBASIC4.97□□□□□ -1.61
SOX3P41225 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SOX3P41225 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.97□□□□□ -1.61
SOX3P41225 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.97□□□□□ -1.61
SOX3P41225 AC125336.1-201ENST00000508893 2827 ntBASIC4.96□□□□□ -1.61
SOX3P41225 C4BPAP1-201ENST00000415474 1893 ntBASIC4.96□□□□□ -1.61
SOX3P41225 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SOX3P41225 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.96□□□□□ -1.62
SOX3P41225 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.96□□□□□ -1.62
SOX3P41225 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SOX3P41225 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SOX3P41225 ICE2P1-201ENST00000512800 1849 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms