Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXC4P09017 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 ABCC13-202ENST00000463099 3842 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 RN7SKP104-201ENST00000362605 328 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HOXC4P09017 GPS2P1-201ENST00000411761 986 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXC4P09017 RBMY2KP-201ENST00000418221 992 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 AL590762.4-201ENST00000425885 253 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 FTLP19-201ENST00000433300 394 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 AL354714.3-201ENST00000447284 493 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 RPL7P61-201ENST00000451721 751 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 RN7SL443P-201ENST00000464331 290 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.05□□□□□ -1.6
HOXC4P09017 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXC4P09017 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXC4P09017 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.05□□□□□ -1.6
HOXC4P09017 AC130364.2-201ENST00000528639 604 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXC4P09017 AC008033.2-201ENST00000542626 177 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXC4P09017 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXC4P09017 EDDM3DP-201ENST00000554692 434 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXC4P09017 ADAM3B-201ENST00000569937 840 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.05□□□□□ -1.6
HOXC4P09017 AC011840.5-201ENST00000582125 771 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 MIR4660-201ENST00000583549 74 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXC4P09017 AL353662.3-201ENST00000625131 237 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 CDY11P-201ENST00000447168 1651 ntBASIC5.05□□□□□ -1.6
HOXC4P09017 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC4P09017 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC4P09017 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC4P09017 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXC4P09017 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC4P09017 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC4P09017 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC4P09017 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HOXC4P09017 RNA5SP123-201ENST00000363244 119 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXC4P09017 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC4P09017 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXC4P09017 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXC4P09017 AC073648.4-201ENST00000442655 781 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 OR7E125P-201ENST00000443450 846 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 MED28P3-201ENST00000444288 531 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 TRY2P-201ENST00000448860 689 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC4P09017 AC020779.1-201ENST00000478757 796 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC4P09017 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC4P09017 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 RNU6-513P-201ENST00000516104 104 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC4P09017 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC4P09017 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXC4P09017 OR1F2P-201ENST00000570470 933 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 MIR4691-201ENST00000583764 85 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXC4P09017 AC024940.4-201ENST00000605507 246 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 AL122125.1-201ENST00000616999 600 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXC4P09017 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC4P09017 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXC4P09017 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
HOXC4P09017 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
HOXC4P09017 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC4P09017 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
HOXC4P09017 AC073429.2-201ENST00000569694 1444 ntBASIC5.04□□□□□ -1.6
HOXC4P09017 AC002525.1-201ENST00000624392 1622 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms