Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC027281.1-201ENST00000574178 758 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC007620.3-201ENST00000608131 497 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC133644.2-201ENST00000608142 540 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC000095.2-202ENST00000637415 154 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 DDX18P6-201ENST00000450119 1997 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 HSPA8P18-201ENST00000439846 1928 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 OR55B1P-203ENST00000641518 2602 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 NPM1P37-201ENST00000403105 874 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC093162.1-201ENST00000419682 124 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 PSMD10P3-201ENST00000437000 448 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 LINC02210-201ENST00000444561 288 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC091685.2-201ENST00000454924 864 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 ACTR6P1-201ENST00000514311 1104 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC111000.6-201ENST00000514471 709 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 RN7SKP66-201ENST00000516681 231 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AP002981.1-201ENST00000517692 975 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AP000676.2-201ENST00000529711 301 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC127381.1-201ENST00000555979 939 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AL731537.2-201ENST00000561565 951 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC005341.1-201ENST00000571086 708 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AL162574.2-201ENST00000614618 657 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC104307.1-201ENST00000616142 196 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AP002799.1-201ENST00000623552 423 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC073592.7-201ENST00000623659 507 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 CFTRP2-201ENST00000634304 199 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC073869.7-201ENST00000640874 297 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 AC114947.2-201ENST00000565748 2125 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 PROS2P-201ENST00000474651 1951 ntBASIC5.24□□□□□ -1.57
CCDC3Q9BQI4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 MIR365B-201ENST00000362317 111 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 OR4K12P-201ENST00000406538 961 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 MRPS21P2-201ENST00000424704 264 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AC017019.1-201ENST00000426129 261 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 RPL12P17-201ENST00000432393 498 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 RPL7P6-201ENST00000480903 738 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 NMNAT1P5-201ENST00000559657 841 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 MIR4436B2-201ENST00000581415 91 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 MIR4436B1-201ENST00000583272 91 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AP001357.1-201ENST00000586304 1053 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AC008833.1-201ENST00000611633 691 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AC090527.3-201ENST00000619041 548 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms