Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AC138907.8-201ENST00000623981 2256 ntBASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 RNU1-13P-201ENST00000384499 162 ntBASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 CR383656.1-201ENST00000484916 377 ntBASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 AC098976.1-201ENST00000513014 541 ntBASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 AC000095.2-202ENST00000637415 154 ntBASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.4□□□□□ -1.86
ALMS1Q8TCU4 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 RN7SKP114-201ENST00000410327 279 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 RNF10P1-201ENST00000418589 369 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 PMS2P3-207ENST00000529061 717 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AL591034.3-201ENST00000605511 685 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC108751.5-201ENST00000492880 1336 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 RNA5SP453-201ENST00000362503 119 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 RNU11-201ENST00000387069 134 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AL732292.1-201ENST00000426692 226 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 OR4C10P-201ENST00000434991 931 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC097523.2-201ENST00000435551 652 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC073465.2-201ENST00000440938 498 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 MTND2P28-201ENST00000457540 1044 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 NPM1P28-201ENST00000492269 840 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC090058.1-201ENST00000498788 435 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC020593.1-201ENST00000507399 299 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AL360012.1-201ENST00000602813 131 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AL121890.3-201ENST00000618494 516 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 AC097063.1-201ENST00000426714 1797 ntBASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC3.4□□□□□ -1.87
ALMS1Q8TCU4 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AC092451.3-201ENST00000625067 1343 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 GDA-209ENST00000545168 5362 ntTSL 2 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 RNA5SP171-201ENST00000391071 115 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 PHBP16-201ENST00000446318 950 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 NIFKP7-201ENST00000503365 834 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 NPM1P5-201ENST00000557228 838 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 NCLP2-201ENST00000416078 1462 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 RN7SKP145-201ENST00000363291 303 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AC009506.2-201ENST00000420635 840 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 MRPL35P2-201ENST00000448009 511 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 IGHV5-78-201ENST00000450948 295 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 HMGB1P4-201ENST00000455362 567 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 IGLVIV-65-201ENST00000517313 360 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AC130364.2-201ENST00000528639 604 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 AC115286.1-201ENST00000604298 434 ntBASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ALMS1Q8TCU4 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 148 ms