Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 PPCS-201ENST00000372556 984 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 RNU6-354P-201ENST00000383862 107 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 RNU6-610P-201ENST00000384264 107 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 AL360271.1-201ENST00000395679 510 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AC233289.1-201ENST00000403700 508 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AL391361.1-201ENST00000405580 489 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 OR3A2-201ENST00000408891 1076 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 RNU4-64P-201ENST00000410795 131 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AL096829.1-201ENST00000413677 457 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 NIFKP3-201ENST00000417799 865 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 BX323845.3-201ENST00000428215 527 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 FO393414.1-201ENST00000428697 1184 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AC005345.1-201ENST00000431868 217 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AL031667.1-201ENST00000440222 725 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 ARL4AP3-201ENST00000441452 574 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 OR13K1P-201ENST00000444577 975 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AL133217.1-201ENST00000450980 425 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AC103563.5-201ENST00000455643 364 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AC068769.1-201ENST00000474767 2426 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AC006539.1-201ENST00000481419 501 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 RPS3AP22-201ENST00000488297 769 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AC021146.10-201ENST00000515628 706 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
USP39Q53GS9 RFPL1S-203ENST00000539579 330 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 MIR4489-201ENST00000578869 62 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.12□□□□□ -1.43
USP39Q53GS9 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 FAM60CP-201ENST00000591086 664 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 SDR42E1P1-201ENST00000611327 477 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 AC104446.1-201ENST00000613728 1321 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.12□□□□□ -1.43
USP39Q53GS9 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
USP39Q53GS9 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.11□□□□□ -1.43
USP39Q53GS9 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.11□□□□□ -1.43
USP39Q53GS9 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.11□□□□□ -1.43
USP39Q53GS9 AC053481.2-202ENST00000582394 1500 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
USP39Q53GS9 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.11□□□□□ -1.43
USP39Q53GS9 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
USP39Q53GS9 Y_RNA.51-201ENST00000362725 102 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 SNORA43.1-201ENST00000364863 140 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 OR7E101P-201ENST00000400428 513 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 MIR1178-201ENST00000408396 91 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 RN7SKP278-201ENST00000410504 342 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC6.11□□□□□ -1.43
USP39Q53GS9 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.11□□□□□ -1.43
USP39Q53GS9 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC6.11□□□□□ -1.43
USP39Q53GS9 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC6.11□□□□□ -1.43
USP39Q53GS9 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms