Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHMT2P34897 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHMT2P34897 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
SHMT2P34897 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SHMT2P34897 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.09□□□□□ -1.59
SHMT2P34897 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.09□□□□□ -1.59
SHMT2P34897 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SHMT2P34897 AC025574.1-201ENST00000554784 1653 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SHMT2P34897 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SHMT2P34897 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SHMT2P34897 AC005522.1-201ENST00000395416 346 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.09□□□□□ -1.59
SHMT2P34897 CLUHP1-201ENST00000435012 1190 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 BTG3P1-201ENST00000435859 716 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.09□□□□□ -1.59
SHMT2P34897 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.09□□□□□ -1.59
SHMT2P34897 AL389915.2-201ENST00000454576 441 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 AC110749.1-201ENST00000462007 357 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.09□□□□□ -1.59
SHMT2P34897 RN7SL799P-201ENST00000475891 298 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.09□□□□□ -1.59
SHMT2P34897 AC006427.1-201ENST00000514359 712 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 EIF3KP3-201ENST00000514461 639 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 FTH1P11-201ENST00000517577 551 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.09□□□□□ -1.59
SHMT2P34897 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.09□□□□□ -1.59
SHMT2P34897 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.09□□□□□ -1.59
SHMT2P34897 AC068993.1-201ENST00000546724 589 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 AC107993.1-201ENST00000591343 684 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 AL162431.4-201ENST00000604674 411 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 AC015849.6-201ENST00000605454 474 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.09□□□□□ -1.59
SHMT2P34897 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.09□□□□□ -1.59
SHMT2P34897 AC004817.4-201ENST00000602396 3625 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SHMT2P34897 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.09□□□□□ -1.59
SHMT2P34897 SCARNA15-201ENST00000607520 4325 ntBASIC5.09□□□□□ -1.59
SHMT2P34897 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SHMT2P34897 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
SHMT2P34897 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
SHMT2P34897 AC023421.1-201ENST00000590535 1785 ntBASIC5.09□□□□□ -1.6
SHMT2P34897 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.08□□□□□ -1.6
SHMT2P34897 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SHMT2P34897 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SHMT2P34897 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SHMT2P34897 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SHMT2P34897 U3.3-201ENST00000362986 216 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.08□□□□□ -1.6
SHMT2P34897 MIR600-201ENST00000385007 98 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 AL050305.1-201ENST00000399993 1230 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 RPL21P67-201ENST00000402896 478 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 NUDT19P3-201ENST00000404698 555 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 RN7SKP126-201ENST00000411143 300 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.08□□□□□ -1.6
SHMT2P34897 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.08□□□□□ -1.6
SHMT2P34897 AL627308.1-201ENST00000435693 821 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC5.08□□□□□ -1.6
SHMT2P34897 RPS29P10-201ENST00000439197 166 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 AL157385.1-201ENST00000446973 268 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.08□□□□□ -1.6
SHMT2P34897 RN7SL189P-201ENST00000468631 289 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 RPL7P41-201ENST00000485823 957 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 AC069304.1-201ENST00000491593 704 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.08□□□□□ -1.6
SHMT2P34897 SNRPCP2-201ENST00000504370 475 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.08□□□□□ -1.6
SHMT2P34897 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.08□□□□□ -1.6
SHMT2P34897 AC100784.1-201ENST00000522790 310 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.08□□□□□ -1.6
SHMT2P34897 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.08□□□□□ -1.6
SHMT2P34897 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC5.08□□□□□ -1.6
SHMT2P34897 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.08□□□□□ -1.6
SHMT2P34897 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 RN7SL708P-201ENST00000580952 299 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 AC008814.1-201ENST00000603797 406 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 AC006363.1-201ENST00000603806 463 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.08□□□□□ -1.6
SHMT2P34897 MTCO1P1-201ENST00000624263 1081 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
SHMT2P34897 C4BPAP1-201ENST00000415474 1893 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.08□□□□□ -1.6
SHMT2P34897 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.08□□□□□ -1.6
SHMT2P34897 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SHMT2P34897 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms