Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC6.56□□□□□ -1.36
COL8A1P27658 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC6.56□□□□□ -1.36
COL8A1P27658 AC136618.2-201ENST00000575091 400 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 AC006441.3-201ENST00000580121 456 ntTSL 4 BASIC6.56□□□□□ -1.36
COL8A1P27658 MIR5682-201ENST00000584864 76 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 NRBF2P1-201ENST00000587407 859 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC6.56□□□□□ -1.36
COL8A1P27658 AC011497.2-201ENST00000600255 639 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 AC000068.3-201ENST00000607934 427 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 AL356585.4-201ENST00000623078 1229 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 Z69720.2-201ENST00000624755 279 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 PISRT1-201ENST00000626175 531 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC6.56□□□□□ -1.36
COL8A1P27658 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL8A1P27658 AC012360.3-201ENST00000610036 3449 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 HMGB4-203ENST00000519684 2343 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL8A1P27658 SUPT7L-205ENST00000464789 2664 ntAPPRIS ALT1 TSL 5 BASIC6.56□□□□□ -1.36
COL8A1P27658 VN2R3P-201ENST00000422626 1412 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.56□□□□□ -1.36
COL8A1P27658 XRCC6P5-201ENST00000435236 1795 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 PRICKLE2-AS3-201ENST00000473434 2496 ntTSL 2 BASIC6.56□□□□□ -1.36
COL8A1P27658 DGKG-203ENST00000382164 3152 ntTSL 5 BASIC6.56□□□□□ -1.36
COL8A1P27658 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC6.56□□□□□ -1.36
COL8A1P27658 MS4A10-201ENST00000308287 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL8A1P27658 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL8A1P27658 AKAP3-206ENST00000545990 3318 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
COL8A1P27658 AC096745.2-201ENST00000627783 1914 ntBASIC6.56□□□□□ -1.36
COL8A1P27658 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL8A1P27658 EZH2-203ENST00000460911 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL8A1P27658 COPG1-201ENST00000314797 3078 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL8A1P27658 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 RIOK3P1-201ENST00000418778 1528 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.55□□□□□ -1.36
COL8A1P27658 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 LINC00501-201ENST00000425388 2046 ntTSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 PARP1P1-201ENST00000413631 3026 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 COX10-AS1-201ENST00000423323 3000 ntTSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC6.55□□□□□ -1.36
COL8A1P27658 AC023055.1-201ENST00000546837 1807 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 AC018880.1-201ENST00000418898 1319 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 AC024560.2-201ENST00000507981 1497 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 RECQL5-203ENST00000420326 3710 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 AMYH02020865.1-201ENST00000621140 2591 ntTSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 AL365475.1-201ENST00000565135 1949 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 Y_RNA.28-201ENST00000362554 111 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 Y_RNA.31-201ENST00000362574 102 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 RN7SKP250-201ENST00000363924 321 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 RNU6-31P-201ENST00000384388 108 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 RNU1-56P-201ENST00000391303 164 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 PDCL3P5-201ENST00000398028 722 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AL592114.1-201ENST00000403842 483 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 RN7SKP205-201ENST00000410999 307 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC6.55□□□□□ -1.36
COL8A1P27658 BTF3P9-201ENST00000418784 283 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 ELOCP4-201ENST00000420090 333 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.55□□□□□ -1.36
COL8A1P27658 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 AP000997.1-201ENST00000424313 479 ntTSL 3 BASIC6.55□□□□□ -1.36
COL8A1P27658 MTCYBP10-201ENST00000424905 650 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 CYCSP11-201ENST00000436426 315 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 IFNA20P-201ENST00000436840 528 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AL512605.1-202ENST00000441919 381 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC6.55□□□□□ -1.36
COL8A1P27658 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 MEMO1P4-201ENST00000453590 386 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AC091685.2-201ENST00000454924 864 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 SRP68P2-201ENST00000456184 254 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AC007731.3-201ENST00000458154 446 ntTSL 5 BASIC6.55□□□□□ -1.36
COL8A1P27658 RN7SL325P-201ENST00000460434 283 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 MRPS17P3-201ENST00000465453 385 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 RPL12P40-201ENST00000467028 488 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 GAPDHP39-201ENST00000481866 979 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 HMGB1P30-201ENST00000492455 606 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 NR1I3-226ENST00000508740 977 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC6.55□□□□□ -1.36
COL8A1P27658 NACAP6-201ENST00000509572 622 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AC105417.1-201ENST00000514691 285 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 RNU6-388P-201ENST00000517012 105 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 RNU6-389P-201ENST00000517048 105 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AC107953.1-201ENST00000522216 297 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 IGHVIII-67-4-201ENST00000524281 296 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.55□□□□□ -1.36
COL8A1P27658 OR6M3P-201ENST00000531567 700 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AC027544.3-201ENST00000535082 757 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.55□□□□□ -1.36
COL8A1P27658 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC6.55□□□□□ -1.36
COL8A1P27658 NDFIP1P1-201ENST00000543144 525 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AC009729.1-201ENST00000548873 1133 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.36
COL8A1P27658 AC068714.1-201ENST00000559623 800 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 IGHV1OR15-3-201ENST00000564926 351 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC6.55□□□□□ -1.36
COL8A1P27658 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms