Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 OR4K15-201ENST00000305051 1216 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 ATP5HP3-201ENST00000396994 486 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 SNORA11.1-201ENST00000408133 129 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 CEACAMP6-201ENST00000452007 574 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 RN7SL319P-201ENST00000480656 221 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 OR2A3P-201ENST00000493774 953 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 AP002812.1-201ENST00000495378 474 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 ENPP7P9-201ENST00000514456 627 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 OR8Q1P-201ENST00000526467 655 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 AC069366.1-201ENST00000583159 838 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
SHANK3Q9BYB0 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 AL355834.1-201ENST00000556602 3965 ntBASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 U3.32-201ENST00000408116 212 ntBASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 RPL23AP1-201ENST00000428990 471 ntBASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 IGKV3OR22-2-201ENST00000517943 313 ntBASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 AC084824.2-201ENST00000548906 345 ntBASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 MIR4715-201ENST00000584117 79 ntBASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 CCT8P1-201ENST00000413611 1657 ntBASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 ECM1P2-201ENST00000503354 1577 ntBASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
SHANK3Q9BYB0 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 BX276092.6-201ENST00000430476 250 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 BX842559.2-201ENST00000451418 605 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 BX276092.8-201ENST00000455722 250 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 RN7SL189P-201ENST00000468631 289 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 MIR6716-201ENST00000613413 80 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 RN7SKP153-201ENST00000365026 316 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 RN7SKP16-201ENST00000410180 299 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 snoU13.29-201ENST00000459370 104 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 AC079064.1-201ENST00000528365 362 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 AL049839.1-201ENST00000556151 657 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 uc_338.7-201ENST00000621834 124 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 NCLP2-201ENST00000416078 1462 ntBASIC6.47□□□□□ -1.37
SHANK3Q9BYB0 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC6.46□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms