Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC016542.1-201ENST00000608259 493 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC092111.2-201ENST00000611627 1414 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 CR589904.2-201ENST00000612533 440 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 MIR6729-201ENST00000618194 65 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AL133370.2-201ENST00000619934 439 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 FRG1EP-201ENST00000634469 770 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 OR8G3P-202ENST00000641572 1255 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC073136.1-201ENST00000449426 2884 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 SRRM1P3-201ENST00000426911 2678 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 ADAM5-202ENST00000399789 1942 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 KARSP1-201ENST00000451871 1752 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 MIR323A-201ENST00000362199 86 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 SNORD51.1-201ENST00000365405 77 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 MIR1203-201ENST00000408812 85 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 RNA5SP178-201ENST00000410380 128 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AL445213.1-201ENST00000412589 747 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 RNF10P1-201ENST00000418589 369 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC127526.2-201ENST00000426436 775 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC073508.1-201ENST00000428866 656 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 BX119321.1-201ENST00000428912 797 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC023141.6-201ENST00000429418 337 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 IGBP1P3-201ENST00000447449 1000 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AL596266.1-201ENST00000448132 400 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AP000547.1-201ENST00000454360 617 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC108729.2-201ENST00000476543 840 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 ATP5LP5-201ENST00000483050 299 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 MTCO1P31-201ENST00000506355 492 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC091912.1-201ENST00000511351 248 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 DPPA2P4-201ENST00000563717 878 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC009852.2-201ENST00000567898 485 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC020978.7-201ENST00000575953 1187 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 MIR4311-201ENST00000580794 100 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 MIR4260-201ENST00000583107 67 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC005776.1-201ENST00000603164 290 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AL671309.1-201ENST00000603750 544 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 AC110792.3-201ENST00000595906 1614 ntBASIC4.75□□□□□ -1.65
NKX3-1Q99801 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
NKX3-1Q99801 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
NKX3-1Q99801 MT-RNR2-201ENST00000387347 1559 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC106872.5-201ENST00000508856 1416 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 SNORA17A-201ENST00000391185 133 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AL009179.1-201ENST00000406085 265 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 187.3 ms