Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC011471.1-201ENST00000585766 187 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 AC244100.1-202ENST00000621554 382 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 SFTPD-AS1-201ENST00000608229 5001 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 RNU1-130P-201ENST00000363930 160 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 RNA5SP372-201ENST00000390836 115 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 RPL21P126-201ENST00000470049 478 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 RPL17P2-201ENST00000491913 451 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 RNU2-30P-201ENST00000516209 141 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 HNRNPRP2-201ENST00000528421 743 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 MIR659-201ENST00000384963 97 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 RN7SL443P-201ENST00000464331 290 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 UQCRHP4-201ENST00000471686 272 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 AC098976.1-201ENST00000513014 541 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 OR4A6P-201ENST00000534364 970 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 RN7SL339P-201ENST00000580597 296 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 AP001885.1-201ENST00000621658 558 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AP000866.6-201ENST00000638898 3579 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC073073.1-201ENST00000493920 463 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 RN7SL802P-201ENST00000577858 299 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC090506.2-201ENST00000624521 419 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 CDRT1-208ENST00000630868 794 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 OR4D9-202ENST00000641278 6063 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 SPATA31D4-201ENST00000419782 4787 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AL357515.1-201ENST00000402967 542 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 RNA5SP345-201ENST00000410646 108 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AL353626.3-201ENST00000413399 657 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 TPT1P3-201ENST00000492841 512 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 AC005261.4-201ENST00000600047 1385 ntBASIC4.78□□□□□ -1.64
VPS13AQ96RL7 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS13AQ96RL7 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AL354766.1-201ENST00000423396 542 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 RPS12P10-201ENST00000427031 377 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 PCDH15-224ENST00000612394 5765 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 SPATA31D5P-201ENST00000376459 4784 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC130364.2-201ENST00000528639 604 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 MIR3124-201ENST00000582636 67 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC108738.1-201ENST00000603703 237 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 BNIP3P19-201ENST00000605397 577 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC005225.5-201ENST00000623547 2225 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms