Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AL022331.1-201ENST00000429025 477 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AL049745.1-201ENST00000433953 286 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AL731534.1-201ENST00000434711 269 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC245047.2-201ENST00000441060 530 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AL513321.1-201ENST00000441175 761 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 RN7SL738P-201ENST00000470264 297 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 RPL23AP40-201ENST00000487630 390 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 MTND3P3-201ENST00000505004 126 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 RN7SKP34-201ENST00000516142 244 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC022832.1-201ENST00000530718 645 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC018552.1-201ENST00000562099 811 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC019322.1-201ENST00000571869 389 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 BMS1P7-201ENST00000602440 1052 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC135178.6-201ENST00000605314 398 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC015849.2-201ENST00000605738 409 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AL356608.1-201ENST00000610034 820 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AL445493.3-201ENST00000619568 477 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AP005435.3-201ENST00000531260 3198 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 SRRM1P3-201ENST00000426911 2678 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AL109941.1-201ENST00000401925 229 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 GSTA12P-201ENST00000402398 508 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 RN7SKP166-201ENST00000410812 305 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 RMRPP5-201ENST00000411156 267 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 NMD3P2-201ENST00000421815 761 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 UBE2V1P6-201ENST00000430840 422 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC006326.1-201ENST00000445465 787 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC093166.4-201ENST00000457867 318 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC098583.1-201ENST00000480875 255 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 LARP7P4-201ENST00000481075 878 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC083982.1-201ENST00000485679 344 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AL035690.1-201ENST00000490892 383 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 RPL23AP73-201ENST00000492507 471 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 CCDC11P1-201ENST00000503137 1162 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 HMGB1P46-201ENST00000520062 610 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 IGLV3-30-201ENST00000524362 298 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC019227.1-201ENST00000526902 510 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 NPM1P42-201ENST00000560329 862 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 DPPA2P4-201ENST00000563717 878 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC233266.2-201ENST00000567067 528 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 RBM22P12-201ENST00000567098 1255 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC119403.2-201ENST00000590960 598 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 LSM1P2-201ENST00000604911 322 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC144521.1-201ENST00000607148 956 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AC091953.3-201ENST00000623220 236 ntBASIC5.5□□□□□ -1.53
COL28A1Q2UY09 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL28A1Q2UY09 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms