Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
H3F3AP84243 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.67□□□□□ -1.66
H3F3AP84243 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
H3F3AP84243 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
H3F3AP84243 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
H3F3AP84243 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.66□□□□□ -1.66
H3F3AP84243 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.66□□□□□ -1.66
H3F3AP84243 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.66□□□□□ -1.66
H3F3AP84243 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
H3F3AP84243 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 FGG-205ENST00000407946 1636 ntTSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
H3F3AP84243 SNORA17.1-201ENST00000362945 126 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 MIR223-201ENST00000385204 110 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 AP000534.2-201ENST00000412729 568 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 NANOGP4-201ENST00000427230 913 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 AC009238.2-201ENST00000431026 355 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 GAPDHP58-201ENST00000438477 1006 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 RPS29P10-201ENST00000439197 166 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 CNOT7P2-201ENST00000441051 832 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.66□□□□□ -1.66
H3F3AP84243 RPL5P22-201ENST00000480199 884 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 RN7SL30P-201ENST00000488416 306 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 AC072052.1-201ENST00000496556 306 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.66□□□□□ -1.66
H3F3AP84243 DPRXP4-201ENST00000578053 568 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 MIR1269B-201ENST00000580405 75 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC4.66□□□□□ -1.66
H3F3AP84243 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 AL034374.2-201ENST00000605281 548 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 AL451049.1-201ENST00000608672 497 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 AC126915.2-201ENST00000610957 190 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 AL512624.1-201ENST00000613638 469 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 AC026367.3-201ENST00000619032 590 ntBASIC4.66□□□□□ -1.66
H3F3AP84243 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.66□□□□□ -1.66
H3F3AP84243 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.66□□□□□ -1.66
H3F3AP84243 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
H3F3AP84243 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
H3F3AP84243 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
H3F3AP84243 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
H3F3AP84243 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
H3F3AP84243 AC104623.2-202ENST00000623477 4002 ntBASIC4.65□□□□□ -1.66
H3F3AP84243 AC011755.1-201ENST00000623763 2049 ntBASIC4.65□□□□□ -1.66
H3F3AP84243 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.66
H3F3AP84243 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
H3F3AP84243 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.65□□□□□ -1.66
H3F3AP84243 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.66
H3F3AP84243 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
H3F3AP84243 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
H3F3AP84243 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
H3F3AP84243 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
H3F3AP84243 RNU6-249P-201ENST00000363016 102 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 RNU1-43P-201ENST00000365052 165 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
H3F3AP84243 RNU6-171P-201ENST00000384354 107 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 MIR323B-201ENST00000385269 82 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 DUTP5-201ENST00000406790 469 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.65□□□□□ -1.67
H3F3AP84243 AC002524.1-201ENST00000411687 547 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.65□□□□□ -1.67
H3F3AP84243 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.65□□□□□ -1.67
H3F3AP84243 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.65□□□□□ -1.67
H3F3AP84243 AC013410.1-201ENST00000436223 1232 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.65□□□□□ -1.67
H3F3AP84243 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.65□□□□□ -1.67
H3F3AP84243 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.65□□□□□ -1.67
H3F3AP84243 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.65□□□□□ -1.67
H3F3AP84243 OR52E3P-201ENST00000452083 936 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 AL389915.2-201ENST00000454576 441 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
H3F3AP84243 SNRPCP2-201ENST00000504370 475 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.65□□□□□ -1.67
H3F3AP84243 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.65□□□□□ -1.67
H3F3AP84243 AC021733.2-201ENST00000518830 497 ntBASIC4.65□□□□□ -1.67
H3F3AP84243 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.65□□□□□ -1.67
H3F3AP84243 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.65□□□□□ -1.67
H3F3AP84243 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.65□□□□□ -1.67
H3F3AP84243 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
H3F3AP84243 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
H3F3AP84243 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms