Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 LINC02162-201ENST00000512521 574 ntTSL 4 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 RNU7-179P-201ENST00000516608 68 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 NARSP2-201ENST00000518524 679 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 IGLVVI-25-1-201ENST00000521893 249 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 C16orf45-203ENST00000561692 534 ntTSL 3 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 SLC6A21P-201ENST00000599458 369 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AC104695.3-201ENST00000604052 296 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AL670379.11-201ENST00000604059 253 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AL670379.10-201ENST00000604330 253 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AL670379.12-201ENST00000605291 253 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AL670379.9-201ENST00000605428 253 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 MIR7156-201ENST00000620979 60 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AL356289.1-201ENST00000635446 743 ntTSL 3 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 CDC42SE1-201ENST00000357235 3045 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 OR6N1-203ENST00000641846 2640 ntAPPRIS P1 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 CCDC191-201ENST00000295878 3976 ntAPPRIS P2 TSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 YME1L1-201ENST00000326799 3994 ntTSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 ANKS1B-211ENST00000547776 3885 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 RAB27A-202ENST00000396307 3459 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 ABCA17P-204ENST00000494925 3478 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AP4S1-211ENST00000616371 4595 ntAPPRIS P1 TSL 2 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 CTAGE3P-201ENST00000454280 2404 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 AC051619.3-201ENST00000560646 2426 ntBASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 ZNF45-204ENST00000589703 2409 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 DGKB-205ENST00000406247 3257 ntTSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 PLCE1-AS2-202ENST00000432782 1612 ntTSL 1 (best) BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 CAST-236ENST00000511782 2466 ntAPPRIS ALT2 TSL 2 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC8□□□□□ -1.13
VPS9D1Q9Y2B5 KIT-201ENST00000288135 5186 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 ANKS1B-220ENST00000550693 3372 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 LINC02208-201ENST00000506769 2803 ntTSL 5 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 XRCC6P2-201ENST00000457831 1822 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 WBP2NL-201ENST00000328823 2255 ntAPPRIS P2 TSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 NMD3-201ENST00000351193 3049 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 GDNF-208ENST00000620847 3638 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RIT2-201ENST00000326695 1092 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 FXYD1-201ENST00000351325 592 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RNU6-1097P-201ENST00000363586 107 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RNU6-770P-201ENST00000363929 105 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RNU6-266P-201ENST00000364225 107 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 GSTM2-204ENST00000369831 1730 ntTSL 2 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 SNORA20.2-201ENST00000383922 131 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 TRBV7-4-201ENST00000390369 347 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 TRBV7-7-201ENST00000390377 347 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 COX6A1P3-201ENST00000404167 293 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RN7SKP266-201ENST00000410232 287 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RNU4-6P-201ENST00000410804 122 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC243428.1-201ENST00000421099 264 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AL731892.1-201ENST00000437364 1192 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AP002856.4-201ENST00000441638 569 ntTSL 4 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 ARL2BPP7-201ENST00000446421 490 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AL161722.1-201ENST00000446972 1032 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 GAS5-219ENST00000449289 542 ntTSL 3 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 GAPDHP28-201ENST00000455134 1003 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RNU6-1132P-201ENST00000459214 107 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 SLC25A51P1-201ENST00000468432 871 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RN7SL702P-201ENST00000488394 292 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC091849.1-201ENST00000509920 121 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 OR7E85P-201ENST00000512164 985 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC113352.1-201ENST00000513196 666 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 GAPDHP44-201ENST00000513513 1007 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RNU4-29P-201ENST00000515943 174 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 RNU6-138P-201ENST00000515952 107 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 Y_RNA.661-201ENST00000516003 99 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 MTND6P20-201ENST00000522986 418 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 OR4P1P-201ENST00000530808 1136 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 PIWIL3-204ENST00000533313 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 PSMA6-202ENST00000540871 912 ntTSL 2 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 MRPL40P1-201ENST00000542687 604 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC016152.1-201ENST00000548344 521 ntTSL 3 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 IMMP1LP2-201ENST00000552954 492 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 PPP2R5C-218ENST00000556260 2013 ntTSL 3 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC133485.3-201ENST00000562604 262 ntTSL 5 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC116348.2-201ENST00000563751 577 ntTSL 4 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC138907.3-201ENST00000563937 262 ntTSL 3 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC138869.2-201ENST00000569850 262 ntTSL 3 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 ADGRF5P1-202ENST00000590130 980 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC008738.6-201ENST00000604605 569 ntTSL 4 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AC087623.4-201ENST00000606593 695 ntBASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC7.99□□□□□ -1.13
VPS9D1Q9Y2B5 LINC01206-228ENST00000628718 871 ntTSL 5 BASIC7.99□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms