Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 RSPH4A-201ENST00000229554 2825 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC133485.2-201ENST00000566232 2484 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 GNG5P1-201ENST00000255500 204 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 FRG1BP-201ENST00000278882 761 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 FRG1CP-201ENST00000358464 769 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 RN7SKP118-201ENST00000364331 330 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 RN7SKP208-201ENST00000365474 361 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 IGLV3-12-201ENST00000390313 356 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 SMIM2-201ENST00000400419 822 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 REG3G-203ENST00000409471 575 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 RNU2-8P-201ENST00000410727 190 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 RIMKLBP2-201ENST00000424737 654 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 HMGB3P10-201ENST00000434734 572 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 OR52B5P-201ENST00000435337 951 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 MTCO1P27-201ENST00000448269 226 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AL672138.1-201ENST00000450604 1015 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AL133351.3-201ENST00000454998 193 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 MTND1P12-201ENST00000455231 147 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC044810.1-201ENST00000480271 711 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 MTND1P3-201ENST00000484956 952 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 SNRPCP11-201ENST00000492453 205 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC023194.1-201ENST00000493084 308 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 ACTR3BP4-201ENST00000503033 1244 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 NIFKP7-201ENST00000503365 834 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 MTND6P2-201ENST00000512226 524 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 BRD9P1-201ENST00000529855 560 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC138207.8-204ENST00000579588 527 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AL158151.4-201ENST00000600965 507 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 COX6CP4-201ENST00000605798 228 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 YWHAEP7-203ENST00000622054 312 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AP006248.2-201ENST00000623309 592 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC129908.1-201ENST00000624553 648 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 LOXHD1-201ENST00000300591 3970 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 THSD4-AS1-202ENST00000562634 2182 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 SAMMSON-203ENST00000641005 2168 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AL161912.4-201ENST00000623889 2468 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 HAVCR2-201ENST00000307851 2907 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 AL137918.1-201ENST00000624542 1922 ntBASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 SNRPEP3-201ENST00000338402 276 ntBASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 RNU6-272P-201ENST00000411028 104 ntBASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 RPS6P23-201ENST00000413224 722 ntBASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 AL445669.1-201ENST00000426743 755 ntBASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 SEPT14P3-201ENST00000439401 183 ntBASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 ACTR3P2-201ENST00000439585 1257 ntBASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 AL732372.2-207ENST00000445840 183 ntBASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 TRGVB-201ENST00000453257 471 ntBASIC7.82□□□□□ -1.16
LIMD1Q9UGP4 SEPT14P2-201ENST00000453405 183 ntBASIC7.82□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms