Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 RN7SL441P-201ENST00000492388 296 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 RNA5SP509-201ENST00000364577 119 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AL121977.1-201ENST00000401636 979 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 RPS17P8-201ENST00000434525 335 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC073410.1-201ENST00000435125 589 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 SLC25A18P1-201ENST00000449385 454 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC041039.1-201ENST00000485656 536 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AL031651.1-201ENST00000615357 1438 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 ERG-210ENST00000442448 5034 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC108463.1-201ENST00000450258 347 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AL049839.1-201ENST00000556151 657 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC091953.5-201ENST00000622919 233 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS13AQ96RL7 AC004076.2-201ENST00000620532 3323 ntBASIC4.81□□□□□ -1.64
VPS13AQ96RL7 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AL133372.1-201ENST00000493565 745 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 GAPDHP62-201ENST00000515313 990 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 MRPL49P2-201ENST00000521066 465 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AC025884.1-201ENST00000556034 378 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AC008739.3-201ENST00000603262 127 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AL049536.1-201ENST00000625043 744 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 CAST-222ENST00000508579 1758 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 ICA1L-202ENST00000392237 5173 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 U3.10-201ENST00000364459 214 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 SNORA2.3-201ENST00000383920 135 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 RN7SL814P-201ENST00000487715 300 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AC015795.1-201ENST00000513669 327 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 SNORA74D-201ENST00000516404 141 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AC009027.1-201ENST00000604510 479 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 ATP5A1P4-201ENST00000556888 1605 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 DROSHA-201ENST00000344624 5102 ntAPPRIS P4 TSL 5 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 AC063976.2-201ENST00000425667 3556 ntBASIC4.8□□□□□ -1.64
VPS13AQ96RL7 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13AQ96RL7 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 AL022722.2-201ENST00000402519 180 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 TMBIM7P-201ENST00000418074 855 ntBASIC4.79□□□□□ -1.64
VPS13AQ96RL7 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS13AQ96RL7 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms