Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC002069.1-201ENST00000429649 1159 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC124944.2-201ENST00000429866 1242 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC019185.1-201ENST00000442718 389 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 AL035551.1-201ENST00000446931 348 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS39Q96JC1 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC093827.1-201ENST00000480094 861 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 RPL15P21-201ENST00000495592 567 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 RNA5SP230-201ENST00000517039 122 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 IGKV2-4-201ENST00000523070 340 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC105105.5-201ENST00000622635 1294 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC091932.2-201ENST00000623014 291 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 AP003400.3-201ENST00000624904 346 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 FRG1EP-201ENST00000634469 770 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 TMEM30CP-203ENST00000637814 1035 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS39Q96JC1 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS39Q96JC1 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 OR13C1P-202ENST00000641378 2919 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AL121950.1-201ENST00000624993 2077 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 OR9G4-201ENST00000302957 984 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AL596448.1-201ENST00000415024 392 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 Z93019.1-201ENST00000416450 973 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AC022022.1-201ENST00000430304 178 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 SUMO2P3-201ENST00000438311 288 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 HMGB1P44-201ENST00000508597 572 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 RFPL4AP5-201ENST00000514977 504 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 RNU6-319P-201ENST00000516025 108 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AC027369.5-201ENST00000533838 755 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AC005341.1-201ENST00000571086 708 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 AP005901.4-201ENST00000577336 569 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 MIR4660-201ENST00000583549 74 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 PRPF19P1-201ENST00000584766 898 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AL356274.1-201ENST00000617064 410 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AC091305.2-201ENST00000624049 1576 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 AC104623.2-202ENST00000623477 4002 ntBASIC5.36□□□□□ -1.55
VPS39Q96JC1 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
VPS39Q96JC1 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS39Q96JC1 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 BTBD10P1-201ENST00000549824 1352 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 RNA5SP510-201ENST00000364697 99 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 RNA5SP122-201ENST00000384457 108 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 RPL12P9-201ENST00000412942 488 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 BMS1P17-202ENST00000416720 316 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 AL121878.1-201ENST00000418638 859 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms