Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AP001823.1-201ENST00000604056 1003 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC023813.4-201ENST00000607580 580 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC092953.2-201ENST00000608000 699 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC084824.5-201ENST00000612009 413 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 RNA5SP439-201ENST00000617595 124 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AL445493.3-201ENST00000619568 477 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 OXSM-209ENST00000626005 309 ntTSL 3 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 OR9K1P-202ENST00000641111 3217 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 CASC19-260ENST00000641828 2001 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AC106872.5-201ENST00000508856 1416 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 CASC19-248ENST00000641674 1356 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 SNORA56-201ENST00000383966 129 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AL157702.1-201ENST00000398764 426 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 GSTA12P-201ENST00000402398 508 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 RAB28P1-201ENST00000411517 641 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AL158827.1-201ENST00000416300 391 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 MTCYBP7-201ENST00000419540 1134 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 RPL5P2-201ENST00000429598 854 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 PTP4A1P3-201ENST00000433661 420 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 NPM1P18-201ENST00000434232 732 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AL353662.1-201ENST00000439099 327 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 XKRY2-201ENST00000442362 1093 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 EEF1B2P6-201ENST00000445713 673 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 SDC4P-201ENST00000453285 601 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AC006499.3-201ENST00000506077 748 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 OR51K1P-201ENST00000510214 950 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AC111000.6-201ENST00000514471 709 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AP002373.2-201ENST00000541631 1060 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 RPA2P1-201ENST00000556557 721 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AC019080.5-201ENST00000624891 757 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AC026523.2-201ENST00000625039 7739 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 AL590763.1-201ENST00000398297 1545 ntBASIC4.82□□□□□ -1.64
PDLIM3Q53GG5 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 NXF4-202ENST00000416098 1465 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
PDLIM3Q53GG5 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms