Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 RNA5SP333-201ENST00000363466 118 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 RNA5SP334-201ENST00000364825 118 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 RNA5SP198-201ENST00000410376 127 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 RN7SKP108-201ENST00000411367 328 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 SEPT2P1-201ENST00000419651 180 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 USP9YP26-201ENST00000421008 661 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC099782.1-201ENST00000425889 474 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 MTCO3P5-201ENST00000433620 714 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC011979.1-201ENST00000472300 483 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 RPL12P31-201ENST00000478433 450 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 RPS3AP43-201ENST00000479743 781 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC106822.1-201ENST00000502647 526 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC091435.1-201ENST00000505442 584 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 KHDC1P1-201ENST00000511053 508 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 COX6B1P4-201ENST00000519826 484 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 IGHVIII-38-1-201ENST00000521454 282 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AP002812.4-201ENST00000532139 286 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC090888.1-201ENST00000561335 1141 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 MIR3912-201ENST00000577566 105 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC005332.4-201ENST00000592752 579 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AL392048.1-201ENST00000613946 534 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AL035661.1-201ENST00000620459 1144 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC022509.4-201ENST00000621404 572 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC012254.5-201ENST00000623573 478 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC018628.1-201ENST00000624147 3819 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 CASC19-206ENST00000641028 1430 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 TTC39DP-201ENST00000416781 1688 ntBASIC6.3□□□□□ -1.4
TRIM39Q9HCM9 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 RN7SKP171-201ENST00000364417 303 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AL139805.1-201ENST00000407837 289 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC099535.1-201ENST00000408928 371 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 LSM5-205ENST00000409952 687 ntTSL 4 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 RN7SKP86-201ENST00000410454 332 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 PTP4A1P5-201ENST00000420305 455 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 MTCO1P3-201ENST00000429327 192 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC009263.1-201ENST00000441193 1239 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms