Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ZNF189-202ENST00000339664 3021 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 NELL2-217ENST00000551601 3148 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 FBXW10-201ENST00000301938 3221 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 OR4A15-201ENST00000314706 1035 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 MIR92A2-201ENST00000385299 75 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 RNU2-5P-201ENST00000410533 180 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC244452.1-201ENST00000413798 141 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 KARSP2-201ENST00000415696 1639 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC008280.1-201ENST00000418851 412 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 OR5P4P-201ENST00000424698 917 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC073900.1-201ENST00000429766 776 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 FTH1P10-202ENST00000430907 550 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 MTND4LP10-201ENST00000435146 291 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 SNRPEP7-201ENST00000438350 220 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC073614.1-201ENST00000438690 650 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 MTCO1P27-201ENST00000448269 226 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC093809.1-201ENST00000509155 340 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC146944.3-201ENST00000509969 371 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 NREP-223ENST00000515855 801 ntTSL 4 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC114550.1-201ENST00000518846 573 ntTSL 4 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 COX6B1P4-201ENST00000519826 484 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC068587.4-201ENST00000533893 186 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AL049780.1-201ENST00000554430 489 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 UBE2FP2-201ENST00000566646 462 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 SNORA59B-202ENST00000578183 701 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AP001180.3-201ENST00000582221 145 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 MIR4307-201ENST00000582802 84 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 SLC25A36P1-201ENST00000590111 465 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 PSMA6P4-201ENST00000603247 718 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AL161729.4-201ENST00000604650 476 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AL355333.1-201ENST00000605632 279 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AP005329.3-201ENST00000609924 686 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AP001506.1-201ENST00000615444 211 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 DLEU1_2.1-201ENST00000617920 342 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 HBG1-202ENST00000632727 369 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC110994.2-201ENST00000635481 492 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 MFSD8-256ENST00000641949 1640 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AP002364.1-201ENST00000623330 3386 ntBASIC5.61□□□□□ -1.51
CCDC140Q96MF4 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms