Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 TPM3P3-201ENST00000521343 354 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 HMGB1P42-201ENST00000532126 553 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AL049779.2-201ENST00000553847 315 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AC096861.1-201ENST00000616652 240 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AL445528.2-201ENST00000620582 470 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AL121768.1-201ENST00000613917 2544 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 RNA5SP453-201ENST00000362503 119 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 RPL10P10-201ENST00000403509 664 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 RANP4-201ENST00000413361 655 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 MRPL53P1-201ENST00000414323 319 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 METTL15P3-201ENST00000415522 1221 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 RPS26P13-201ENST00000419030 330 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 PA2G4P6-201ENST00000438325 1197 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC005297.1-201ENST00000444765 862 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AL445687.2-201ENST00000458156 728 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 RN7SL583P-201ENST00000475692 287 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 OR56A7P-201ENST00000524865 941 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC015720.2-201ENST00000567709 334 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 MIR4480-201ENST00000582492 71 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC010245.2-201ENST00000606908 1167 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC109446.4-201ENST00000623235 2755 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC016583.1-201ENST00000624221 2431 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AC132825.1-201ENST00000463573 2247 ntBASIC5.54□□□□□ -1.52
COL28A1Q2UY09 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL28A1Q2UY09 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL035419.1-201ENST00000397037 564 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL121977.1-201ENST00000401636 979 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 PTCD2P2-201ENST00000415579 1095 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL365220.1-201ENST00000432923 399 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL627224.1-201ENST00000448334 444 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC239798.3-201ENST00000454459 408 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 RPS18P6-201ENST00000476880 458 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms