Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL4A4P53420 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL4A4P53420 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL4A4P53420 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.47□□□□□ -1.53
COL4A4P53420 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.47□□□□□ -1.53
COL4A4P53420 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL4A4P53420 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
COL4A4P53420 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.47□□□□□ -1.53
COL4A4P53420 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.47□□□□□ -1.53
COL4A4P53420 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.47□□□□□ -1.53
COL4A4P53420 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.47□□□□□ -1.53
COL4A4P53420 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL4A4P53420 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.47□□□□□ -1.53
COL4A4P53420 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.47□□□□□ -1.53
COL4A4P53420 SNORA57.1-201ENST00000391227 145 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.47□□□□□ -1.53
COL4A4P53420 GTF2IP5-201ENST00000414608 731 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AC046176.1-201ENST00000435260 1170 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.47□□□□□ -1.53
COL4A4P53420 AC021193.1-201ENST00000511607 420 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.47□□□□□ -1.53
COL4A4P53420 AP002981.1-201ENST00000517692 975 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.47□□□□□ -1.53
COL4A4P53420 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL4A4P53420 AC105129.1-201ENST00000560250 297 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AC011626.1-201ENST00000604710 562 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 RNA5SP439-201ENST00000617595 124 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL4A4P53420 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
COL4A4P53420 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.53
COL4A4P53420 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
COL4A4P53420 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC5.46□□□□□ -1.53
COL4A4P53420 CASC19-260ENST00000641828 2001 ntBASIC5.46□□□□□ -1.53
COL4A4P53420 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL4A4P53420 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.46□□□□□ -1.53
COL4A4P53420 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
COL4A4P53420 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.46□□□□□ -1.53
COL4A4P53420 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.46□□□□□ -1.53
COL4A4P53420 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL4A4P53420 AC104964.3-201ENST00000606115 2860 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL4A4P53420 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL4A4P53420 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL4A4P53420 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL4A4P53420 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.46□□□□□ -1.54
COL4A4P53420 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL4A4P53420 SAMMSON-226ENST00000642089 1582 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.46□□□□□ -1.54
COL4A4P53420 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.46□□□□□ -1.54
COL4A4P53420 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL4A4P53420 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AC092681.1-201ENST00000297369 291 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL4A4P53420 ELOCP19-201ENST00000411919 318 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.46□□□□□ -1.54
COL4A4P53420 RPS27AP7-201ENST00000422792 455 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AC007559.1-201ENST00000428736 355 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 BX323845.1-201ENST00000432417 179 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.46□□□□□ -1.54
COL4A4P53420 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AL359265.1-201ENST00000440296 795 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AC010350.1-201ENST00000504908 231 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 MORF4L1P3-201ENST00000525966 950 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 GTF2IP11-201ENST00000526931 420 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AC009643.1-201ENST00000532030 391 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.46□□□□□ -1.54
COL4A4P53420 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.46□□□□□ -1.54
COL4A4P53420 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.46□□□□□ -1.54
COL4A4P53420 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.46□□□□□ -1.54
COL4A4P53420 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
COL4A4P53420 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.46□□□□□ -1.54
COL4A4P53420 AC125494.2-201ENST00000602431 657 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AC006338.2-201ENST00000616864 791 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AC026367.3-201ENST00000619032 590 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL4A4P53420 AC063976.2-201ENST00000425667 3556 ntBASIC5.46□□□□□ -1.54
COL4A4P53420 AC010401.2-201ENST00000575137 4934 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC5.45□□□□□ -1.54
COL4A4P53420 ADAM24P-201ENST00000398655 2101 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL4A4P53420 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
COL4A4P53420 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL4A4P53420 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.45□□□□□ -1.54
COL4A4P53420 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL4A4P53420 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL4A4P53420 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL4A4P53420 NUDT19P3-201ENST00000404698 555 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 RSU1P3-201ENST00000412878 835 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.45□□□□□ -1.54
COL4A4P53420 AC073143.1-201ENST00000436316 395 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 OR52J1P-201ENST00000450596 932 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 AC010733.1-201ENST00000451515 401 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.45□□□□□ -1.54
COL4A4P53420 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.45□□□□□ -1.54
COL4A4P53420 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.45□□□□□ -1.54
COL4A4P53420 AL110118.1-201ENST00000553543 400 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms