Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RPL7L1P4-201ENST00000513004 707 ntBASIC5.39□□□□□ -1.55
MSH3P20585 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.39□□□□□ -1.55
MSH3P20585 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.39□□□□□ -1.55
MSH3P20585 AC006518.1-201ENST00000541449 943 ntBASIC5.39□□□□□ -1.55
MSH3P20585 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.39□□□□□ -1.55
MSH3P20585 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.39□□□□□ -1.55
MSH3P20585 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH3P20585 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.39□□□□□ -1.55
MSH3P20585 AC009237.13-201ENST00000603193 276 ntBASIC5.39□□□□□ -1.55
MSH3P20585 SUGT1P3-202ENST00000604259 383 ntBASIC5.39□□□□□ -1.55
MSH3P20585 AC007423.1-201ENST00000605009 627 ntBASIC5.39□□□□□ -1.55
MSH3P20585 AC000068.2-201ENST00000608816 460 ntBASIC5.39□□□□□ -1.55
MSH3P20585 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.39□□□□□ -1.55
MSH3P20585 AC008833.1-201ENST00000611633 691 ntBASIC5.39□□□□□ -1.55
MSH3P20585 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC5.39□□□□□ -1.55
MSH3P20585 AC073869.7-201ENST00000640874 297 ntBASIC5.39□□□□□ -1.55
MSH3P20585 SAMMSON-209ENST00000641222 1100 ntBASIC5.39□□□□□ -1.55
MSH3P20585 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.39□□□□□ -1.55
MSH3P20585 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH3P20585 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.39□□□□□ -1.55
MSH3P20585 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH3P20585 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH3P20585 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH3P20585 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
MSH3P20585 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH3P20585 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
MSH3P20585 OR51C1P-202ENST00000641159 1444 ntBASIC5.39□□□□□ -1.55
MSH3P20585 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.39□□□□□ -1.55
MSH3P20585 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSH3P20585 AP005432.1-201ENST00000580891 3485 ntBASIC5.38□□□□□ -1.55
MSH3P20585 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSH3P20585 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.38□□□□□ -1.55
MSH3P20585 AC002525.1-201ENST00000624392 1622 ntBASIC5.38□□□□□ -1.55
MSH3P20585 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
MSH3P20585 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
MSH3P20585 MRRFP1-201ENST00000435941 1675 ntBASIC5.38□□□□□ -1.55
MSH3P20585 AC093849.1-201ENST00000563631 2209 ntBASIC5.38□□□□□ -1.55
MSH3P20585 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
MSH3P20585 Y_RNA.62-201ENST00000362840 99 ntBASIC5.38□□□□□ -1.55
MSH3P20585 RNU6-670P-201ENST00000364312 104 ntBASIC5.38□□□□□ -1.55
MSH3P20585 RN7SKP269-201ENST00000365545 319 ntBASIC5.38□□□□□ -1.55
MSH3P20585 U3.25-201ENST00000391209 220 ntBASIC5.38□□□□□ -1.55
MSH3P20585 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSH3P20585 AC007064.3-201ENST00000422608 359 ntBASIC5.38□□□□□ -1.55
MSH3P20585 SRSF1P1-201ENST00000424058 520 ntBASIC5.38□□□□□ -1.55
MSH3P20585 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC5.38□□□□□ -1.55
MSH3P20585 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.38□□□□□ -1.55
MSH3P20585 MTCO1P57-201ENST00000432182 261 ntBASIC5.38□□□□□ -1.55
MSH3P20585 NDUFA5P1-201ENST00000433858 341 ntBASIC5.38□□□□□ -1.55
MSH3P20585 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH3P20585 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.38□□□□□ -1.55
MSH3P20585 MTCO3P43-201ENST00000440974 771 ntBASIC5.38□□□□□ -1.55
MSH3P20585 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.38□□□□□ -1.55
MSH3P20585 RPL7P45-201ENST00000455851 743 ntBASIC5.38□□□□□ -1.55
MSH3P20585 AC092754.1-201ENST00000472975 479 ntBASIC5.38□□□□□ -1.55
MSH3P20585 SIAH1P1-201ENST00000479411 923 ntBASIC5.38□□□□□ -1.55
MSH3P20585 EIF3LP3-201ENST00000495197 822 ntBASIC5.38□□□□□ -1.55
MSH3P20585 AC108693.1-201ENST00000496068 432 ntBASIC5.38□□□□□ -1.55
MSH3P20585 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.38□□□□□ -1.55
MSH3P20585 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.38□□□□□ -1.55
MSH3P20585 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH3P20585 BX510359.5-201ENST00000515651 304 ntBASIC5.38□□□□□ -1.55
MSH3P20585 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH3P20585 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH3P20585 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.38□□□□□ -1.55
MSH3P20585 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH3P20585 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSH3P20585 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH3P20585 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSH3P20585 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH3P20585 AC090079.2-201ENST00000575289 768 ntBASIC5.38□□□□□ -1.55
MSH3P20585 NPM1P45-201ENST00000583151 559 ntBASIC5.38□□□□□ -1.55
MSH3P20585 FAM72A-208ENST00000607379 1139 ntBASIC5.38□□□□□ -1.55
MSH3P20585 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.38□□□□□ -1.55
MSH3P20585 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSH3P20585 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSH3P20585 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSH3P20585 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
MSH3P20585 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.38□□□□□ -1.55
MSH3P20585 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
MSH3P20585 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.37□□□□□ -1.55
MSH3P20585 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
MSH3P20585 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.37□□□□□ -1.55
MSH3P20585 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 SNORA16A-201ENST00000384342 137 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC092642.1-201ENST00000392417 425 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms