Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL3A1P02461 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL3A1P02461 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL3A1P02461 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.74□□□□□ -1.33
COL3A1P02461 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.74□□□□□ -1.33
COL3A1P02461 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL3A1P02461 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC6.74□□□□□ -1.33
COL3A1P02461 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL3A1P02461 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
COL3A1P02461 RN7SKP113-201ENST00000363891 295 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC6.73□□□□□ -1.33
COL3A1P02461 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC6.73□□□□□ -1.33
COL3A1P02461 OR2AM1P-201ENST00000422137 422 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.73□□□□□ -1.33
COL3A1P02461 RPS27P18-201ENST00000431701 247 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 CEACAMP7-201ENST00000444105 496 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 AC105233.1-201ENST00000498840 781 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 RN7SKP66-201ENST00000516681 231 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 RN7SKP260-201ENST00000516907 149 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 AL049539.1-201ENST00000611964 459 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 RNA5SP439-201ENST00000617595 124 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 AC091905.4-201ENST00000623432 202 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
COL3A1P02461 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 IRF5P1-201ENST00000504852 2164 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 AC092376.2-201ENST00000622621 4116 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.73□□□□□ -1.33
COL3A1P02461 MTND3P20-201ENST00000407663 186 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC6.73□□□□□ -1.33
COL3A1P02461 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC6.73□□□□□ -1.33
COL3A1P02461 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC6.73□□□□□ -1.33
COL3A1P02461 OR52E3P-201ENST00000452083 936 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.73□□□□□ -1.33
COL3A1P02461 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.73□□□□□ -1.33
COL3A1P02461 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.73□□□□□ -1.33
COL3A1P02461 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC6.73□□□□□ -1.33
COL3A1P02461 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC6.73□□□□□ -1.33
COL3A1P02461 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC6.73□□□□□ -1.33
COL3A1P02461 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.73□□□□□ -1.33
COL3A1P02461 AC097478.2-201ENST00000610572 514 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 AL356752.1-201ENST00000615844 593 ntBASIC6.73□□□□□ -1.33
COL3A1P02461 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL3A1P02461 AC010168.2-201ENST00000562691 5428 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.72□□□□□ -1.33
COL3A1P02461 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL3A1P02461 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.72□□□□□ -1.33
COL3A1P02461 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
COL3A1P02461 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
COL3A1P02461 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL3A1P02461 AC140134.1-201ENST00000511830 3544 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL3A1P02461 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL3A1P02461 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.72□□□□□ -1.33
COL3A1P02461 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL3A1P02461 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL3A1P02461 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL3A1P02461 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL3A1P02461 AC103591.2-201ENST00000265259 766 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 AL035079.1-201ENST00000405210 287 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 AP002530.1-201ENST00000405705 684 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 COX6B1P1-201ENST00000415962 213 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC6.72□□□□□ -1.33
COL3A1P02461 MTATP6P11-201ENST00000428071 670 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 ELOCP3-201ENST00000439303 348 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.72□□□□□ -1.33
COL3A1P02461 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC6.72□□□□□ -1.33
COL3A1P02461 AC009268.1-201ENST00000561352 1203 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.72□□□□□ -1.33
COL3A1P02461 RPL21P136-201ENST00000605378 396 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 AP001784.1-201ENST00000624107 428 ntBASIC6.72□□□□□ -1.33
COL3A1P02461 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.72□□□□□ -1.33
COL3A1P02461 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL3A1P02461 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.71□□□□□ -1.33
COL3A1P02461 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.33
COL3A1P02461 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.71□□□□□ -1.33
COL3A1P02461 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL3A1P02461 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL3A1P02461 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.71□□□□□ -1.34
COL3A1P02461 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL3A1P02461 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.71□□□□□ -1.34
COL3A1P02461 AC007618.1-201ENST00000366455 732 ntBASIC6.71□□□□□ -1.34
COL3A1P02461 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL3A1P02461 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL3A1P02461 LRRC37BP1-201ENST00000398851 714 ntBASIC6.71□□□□□ -1.34
COL3A1P02461 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC6.71□□□□□ -1.34
COL3A1P02461 GTF2IP5-201ENST00000414608 731 ntBASIC6.71□□□□□ -1.34
COL3A1P02461 CHEK2P3-201ENST00000416118 248 ntBASIC6.71□□□□□ -1.34
COL3A1P02461 SFR1P2-201ENST00000421841 730 ntBASIC6.71□□□□□ -1.34
COL3A1P02461 AC104837.2-201ENST00000427236 424 ntBASIC6.71□□□□□ -1.34
COL3A1P02461 RPL5P2-201ENST00000429598 854 ntBASIC6.71□□□□□ -1.34
COL3A1P02461 FABP7P2-201ENST00000429946 379 ntBASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 154.7 ms