Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC111188.2-201ENST00000529697 1387 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 BIN2P1-201ENST00000504996 1530 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL390774.1-201ENST00000411924 246 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL158050.1-201ENST00000416077 457 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 CYP4F30P-202ENST00000420048 405 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 RPL7P30-201ENST00000420888 709 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PTP4A1P3-201ENST00000433661 420 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL596276.1-201ENST00000434465 418 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC092393.1-201ENST00000439625 742 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 HCG14-201ENST00000444986 413 ntTSL 2 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 NDUFAF4P2-201ENST00000445374 520 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 VN1R34P-201ENST00000447387 883 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 MTCO1P48-201ENST00000448024 1096 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 RPL9P15-201ENST00000491096 532 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 OR7E10P-201ENST00000526420 991 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC027796.1-201ENST00000575593 512 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 GLYATL1P2-202ENST00000588046 902 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 Z82195.1-201ENST00000604558 398 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL163642.2-201ENST00000604722 1019 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL031601.1-201ENST00000605702 394 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AC025016.1-201ENST00000616746 682 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 AL136981.2-201ENST00000617319 734 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 MAPK10-287ENST00000641217 3037 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 KYNUP3-201ENST00000574386 1341 ntBASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC39Q9UFE4 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 Y_RNA.248-201ENST00000364501 109 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 RNA5SP478-201ENST00000364657 115 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 U3.43-201ENST00000410734 213 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 NME1P1-201ENST00000420914 382 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 RPF2P1-201ENST00000424137 906 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 IPMKP1-201ENST00000425988 855 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AL645939.3-201ENST00000435408 225 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 C1DP3-201ENST00000455013 423 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC063955.1-201ENST00000462872 685 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 RPS7P10-201ENST00000464254 603 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 RN7SL413P-201ENST00000482700 297 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 RNU6-759P-201ENST00000516740 103 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 IGHVIII-11-1-201ENST00000522733 267 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 BCAS2P1-201ENST00000528022 632 ntBASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms