Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SNORD46.2-201ENST00000516021 102 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 AC024405.1-201ENST00000532521 1042 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 AL390334.1-201ENST00000556395 450 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 AC027243.2-201ENST00000602530 724 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 AC007342.5-201ENST00000571340 2142 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 SCARNA15-201ENST00000607520 4325 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 TET1P1-201ENST00000426627 2301 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC42Q96M95 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC42Q96M95 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC42Q96M95 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 VN1R12P-201ENST00000403778 876 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 RNA5SP296-201ENST00000410523 111 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 SDHDP6-201ENST00000414693 480 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 GAPDHP34-201ENST00000432112 823 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 RPL7AP61-201ENST00000443410 636 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC004980.3-201ENST00000447046 365 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC020779.1-201ENST00000478757 796 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 EIF1P7-201ENST00000487533 337 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 RPS26P24-201ENST00000497656 331 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC112191.2-201ENST00000522428 333 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 NDUFB4P11-201ENST00000560510 395 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 RPL10P14-201ENST00000565265 298 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 DPRXP4-201ENST00000578053 568 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 FO393422.1-201ENST00000603908 708 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 AL139407.1-201ENST00000613826 1175 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AL122125.1-201ENST00000616999 600 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC42Q96M95 AC135068.12-201ENST00000637370 931 ntBASIC5.53□□□□□ -1.52
CCDC42Q96M95 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC42Q96M95 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC42Q96M95 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 AC011447.7-201ENST00000624228 1590 ntBASIC5.52□□□□□ -1.53
CCDC42Q96M95 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC42Q96M95 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 OR2AH1P-201ENST00000425717 928 ntBASIC5.52□□□□□ -1.53
CCDC42Q96M95 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 AC093166.2-201ENST00000455969 1017 ntBASIC5.52□□□□□ -1.53
CCDC42Q96M95 RN7SL649P-201ENST00000496974 275 ntBASIC5.52□□□□□ -1.53
CCDC42Q96M95 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 HMGB3P16-201ENST00000508037 287 ntBASIC5.52□□□□□ -1.53
CCDC42Q96M95 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 AGGF1P9-201ENST00000561884 913 ntBASIC5.52□□□□□ -1.53
CCDC42Q96M95 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 AP005131.7-201ENST00000610087 611 ntBASIC5.52□□□□□ -1.53
CCDC42Q96M95 WBP1LP8-201ENST00000617401 327 ntBASIC5.52□□□□□ -1.53
CCDC42Q96M95 AC015914.2-201ENST00000618167 288 ntBASIC5.52□□□□□ -1.53
CCDC42Q96M95 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC42Q96M95 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC42Q96M95 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC42Q96M95 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
CCDC42Q96M95 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms