Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL121873.1-201ENST00000616013 524 ntBASIC8.44□□□□□ -1.06
CUX1P39880 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC8.44□□□□□ -1.06
CUX1P39880 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC8.44□□□□□ -1.06
CUX1P39880 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC8.44□□□□□ -1.06
CUX1P39880 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC8.44□□□□□ -1.06
CUX1P39880 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC8.44□□□□□ -1.06
CUX1P39880 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
CUX1P39880 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
CUX1P39880 AC010401.2-201ENST00000575137 4934 ntBASIC8.44□□□□□ -1.06
CUX1P39880 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
CUX1P39880 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
CUX1P39880 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
CUX1P39880 AL136116.2-201ENST00000404020 785 ntBASIC8.44□□□□□ -1.06
CUX1P39880 RN7SKP106-201ENST00000410832 272 ntBASIC8.44□□□□□ -1.06
CUX1P39880 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC8.44□□□□□ -1.06
CUX1P39880 AC017019.1-201ENST00000426129 261 ntBASIC8.44□□□□□ -1.06
CUX1P39880 AC010326.1-201ENST00000462726 602 ntBASIC8.44□□□□□ -1.06
CUX1P39880 AC091153.1-201ENST00000466297 402 ntBASIC8.44□□□□□ -1.06
CUX1P39880 AC134698.5-201ENST00000519444 336 ntBASIC8.44□□□□□ -1.06
CUX1P39880 AC009643.1-201ENST00000532030 391 ntBASIC8.44□□□□□ -1.06
CUX1P39880 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC8.44□□□□□ -1.06
CUX1P39880 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC8.44□□□□□ -1.06
CUX1P39880 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC8.44□□□□□ -1.06
CUX1P39880 AL590392.1-201ENST00000604960 446 ntBASIC8.44□□□□□ -1.06
CUX1P39880 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC8.43□□□□□ -1.06
CUX1P39880 AC010168.2-201ENST00000562691 5428 ntBASIC8.43□□□□□ -1.06
CUX1P39880 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC8.43□□□□□ -1.06
CUX1P39880 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 AL592148.3-201ENST00000608771 2646 ntBASIC8.43□□□□□ -1.06
CUX1P39880 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
CUX1P39880 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 SNORA70.9-201ENST00000384370 135 ntBASIC8.43□□□□□ -1.06
CUX1P39880 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC8.43□□□□□ -1.06
CUX1P39880 GTF2IP2-201ENST00000424290 697 ntBASIC8.43□□□□□ -1.06
CUX1P39880 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 OR1H1P-201ENST00000448731 937 ntBASIC8.43□□□□□ -1.06
CUX1P39880 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC8.43□□□□□ -1.06
CUX1P39880 snoU13.1-201ENST00000459157 104 ntBASIC8.43□□□□□ -1.06
CUX1P39880 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC8.43□□□□□ -1.06
CUX1P39880 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC8.43□□□□□ -1.06
CUX1P39880 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC8.43□□□□□ -1.06
CUX1P39880 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC8.43□□□□□ -1.06
CUX1P39880 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC8.43□□□□□ -1.06
CUX1P39880 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC8.42□□□□□ -1.06
CUX1P39880 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 AL137100.1-201ENST00000556703 1620 ntBASIC8.42□□□□□ -1.06
CUX1P39880 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 ALB-214ENST00000509063 1911 ntTSL 5 BASIC8.42□□□□□ -1.06
CUX1P39880 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC8.42□□□□□ -1.06
CUX1P39880 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC8.42□□□□□ -1.06
CUX1P39880 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC8.42□□□□□ -1.06
CUX1P39880 AC004975.1-201ENST00000428733 208 ntBASIC8.42□□□□□ -1.06
CUX1P39880 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC8.42□□□□□ -1.06
CUX1P39880 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC8.42□□□□□ -1.06
CUX1P39880 AC116562.1-201ENST00000485355 781 ntBASIC8.42□□□□□ -1.06
CUX1P39880 FGB-207ENST00000509493 1164 ntTSL 5 BASIC8.42□□□□□ -1.06
CUX1P39880 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC8.42□□□□□ -1.06
CUX1P39880 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC8.42□□□□□ -1.06
CUX1P39880 MIR6853-201ENST00000619642 74 ntBASIC8.42□□□□□ -1.06
CUX1P39880 AC021106.3-201ENST00000623925 531 ntBASIC8.42□□□□□ -1.06
CUX1P39880 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC8.42□□□□□ -1.06
CUX1P39880 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
CUX1P39880 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC8.42□□□□□ -1.06
CUX1P39880 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
CUX1P39880 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CUX1P39880 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
CUX1P39880 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC8.41□□□□□ -1.06
CUX1P39880 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC8.41□□□□□ -1.06
CUX1P39880 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC8.41□□□□□ -1.06
CUX1P39880 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CUX1P39880 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
CUX1P39880 AL451142.1-201ENST00000375867 775 ntBASIC8.41□□□□□ -1.06
CUX1P39880 U3.22-201ENST00000391120 215 ntBASIC8.41□□□□□ -1.06
CUX1P39880 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
CUX1P39880 AC090018.1-201ENST00000434369 367 ntBASIC8.41□□□□□ -1.06
CUX1P39880 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC8.41□□□□□ -1.06
CUX1P39880 AC013356.1-201ENST00000489027 564 ntBASIC8.41□□□□□ -1.06
CUX1P39880 AC020937.1-201ENST00000519677 1013 ntBASIC8.41□□□□□ -1.06
CUX1P39880 AC022360.1-201ENST00000521058 340 ntBASIC8.41□□□□□ -1.06
CUX1P39880 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
CUX1P39880 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC8.41□□□□□ -1.06
CUX1P39880 AC103792.1-201ENST00000603591 919 ntBASIC8.41□□□□□ -1.06
CUX1P39880 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
CUX1P39880 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CUX1P39880 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC8.41□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms