Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 U3.31-201ENST00000408113 216 ntBASIC6.96□□□□□ -1.3
MSX1P28360 MIR548P-201ENST00000408336 84 ntBASIC6.96□□□□□ -1.3
MSX1P28360 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC6.96□□□□□ -1.3
MSX1P28360 AL139128.1-201ENST00000413921 941 ntBASIC6.96□□□□□ -1.3
MSX1P28360 RPS7P15-201ENST00000415804 584 ntBASIC6.96□□□□□ -1.3
MSX1P28360 TMBIM7P-201ENST00000418074 855 ntBASIC6.96□□□□□ -1.3
MSX1P28360 ISCA1P6-201ENST00000427740 390 ntBASIC6.96□□□□□ -1.3
MSX1P28360 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC6.96□□□□□ -1.3
MSX1P28360 AC093716.1-201ENST00000435923 377 ntBASIC6.96□□□□□ -1.3
MSX1P28360 SKP1P1-201ENST00000438081 489 ntBASIC6.96□□□□□ -1.3
MSX1P28360 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC6.96□□□□□ -1.3
MSX1P28360 MRPL50P4-201ENST00000446432 475 ntBASIC6.96□□□□□ -1.3
MSX1P28360 ZNF385D-AS2-202ENST00000448980 370 ntTSL 3 BASIC6.96□□□□□ -1.3
MSX1P28360 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC6.96□□□□□ -1.3
MSX1P28360 AC093799.1-201ENST00000452411 499 ntBASIC6.96□□□□□ -1.3
MSX1P28360 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC6.96□□□□□ -1.3
MSX1P28360 PTMAP1-205ENST00000455552 325 ntBASIC6.96□□□□□ -1.3
MSX1P28360 TDGF1P6-201ENST00000463873 448 ntBASIC6.96□□□□□ -1.3
MSX1P28360 RPL12P40-201ENST00000467028 488 ntBASIC6.96□□□□□ -1.3
MSX1P28360 RPL7P19-201ENST00000469948 618 ntBASIC6.96□□□□□ -1.3
MSX1P28360 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC6.96□□□□□ -1.3
MSX1P28360 RN7SL549P-201ENST00000478997 282 ntBASIC6.96□□□□□ -1.3
MSX1P28360 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC6.96□□□□□ -1.3
MSX1P28360 RPL36AP51-201ENST00000487216 318 ntBASIC6.96□□□□□ -1.3
MSX1P28360 ZNF695-204ENST00000487338 826 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 TMEM267-202ENST00000500337 2950 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC6.96□□□□□ -1.3
MSX1P28360 AC012613.1-202ENST00000512647 424 ntTSL 3 BASIC6.96□□□□□ -1.3
MSX1P28360 RN7SKP13-201ENST00000515933 244 ntBASIC6.96□□□□□ -1.3
MSX1P28360 RNA5SP135-201ENST00000517019 125 ntBASIC6.96□□□□□ -1.3
MSX1P28360 AC084337.1-201ENST00000524809 686 ntBASIC6.96□□□□□ -1.3
MSX1P28360 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC6.96□□□□□ -1.3
MSX1P28360 AC126755.2-209ENST00000531453 699 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 AP002812.4-201ENST00000532139 286 ntBASIC6.96□□□□□ -1.3
MSX1P28360 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC6.96□□□□□ -1.3
MSX1P28360 AC138969.1-212ENST00000541593 699 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 NPIPA5-203ENST00000543801 699 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 PPIAL4D-201ENST00000544708 495 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
MSX1P28360 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.96□□□□□ -1.3
MSX1P28360 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC6.96□□□□□ -1.3
MSX1P28360 RN7SL689P-201ENST00000577215 297 ntBASIC6.96□□□□□ -1.3
MSX1P28360 MTCYBP13-201ENST00000578634 1093 ntBASIC6.96□□□□□ -1.3
MSX1P28360 AC090415.1-201ENST00000581877 847 ntBASIC6.96□□□□□ -1.3
MSX1P28360 MIR3171-201ENST00000584270 74 ntBASIC6.96□□□□□ -1.3
MSX1P28360 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC6.96□□□□□ -1.3
MSX1P28360 BNIP3P23-201ENST00000599655 511 ntBASIC6.96□□□□□ -1.3
MSX1P28360 ANKRD20A19P-203ENST00000602724 295 ntBASIC6.96□□□□□ -1.3
MSX1P28360 AC113139.1-201ENST00000605049 239 ntBASIC6.96□□□□□ -1.3
MSX1P28360 AC011816.2-201ENST00000607089 556 ntBASIC6.96□□□□□ -1.3
MSX1P28360 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC6.96□□□□□ -1.3
MSX1P28360 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC6.96□□□□□ -1.3
MSX1P28360 RMST_7.1-201ENST00000621935 268 ntBASIC6.96□□□□□ -1.3
MSX1P28360 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.96□□□□□ -1.3
MSX1P28360 TSHZ2-205ENST00000626626 670 ntBASIC6.96□□□□□ -1.3
MSX1P28360 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC6.96□□□□□ -1.3
MSX1P28360 LINC00964-202ENST00000510897 3534 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 FHL1-216ENST00000535737 2325 ntTSL 3 BASIC6.96□□□□□ -1.3
MSX1P28360 MFSD8-227ENST00000641393 4069 ntBASIC6.96□□□□□ -1.3
MSX1P28360 CDY1-202ENST00000361963 2177 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
MSX1P28360 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
MSX1P28360 BBX-207ENST00000416476 2178 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 CD86-202ENST00000330540 2708 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 ADAM3A-205ENST00000481351 2379 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.96□□□□□ -1.3
MSX1P28360 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 ATF2-203ENST00000392544 1919 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 AL109811.1-201ENST00000452378 2682 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 CASC23-201ENST00000534076 1563 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 GTF2H2B-203ENST00000508065 1432 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AC010928.1-201ENST00000592477 1447 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AL031651.1-201ENST00000615357 1438 ntBASIC6.95□□□□□ -1.3
MSX1P28360 IL12B-201ENST00000231228 2761 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 NPIPB5-209ENST00000517539 3569 ntAPPRIS P2 TSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 NSRP1-217ENST00000612959 2420 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 APP-209ENST00000440126 2846 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSX1P28360 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 PLEKHS1-202ENST00000361048 3249 ntAPPRIS P3 TSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 PLEKHS1-207ENST00000619563 3247 ntTSL 5 BASIC6.95□□□□□ -1.3
MSX1P28360 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC6.95□□□□□ -1.3
MSX1P28360 RNA5SP442-201ENST00000365050 107 ntBASIC6.95□□□□□ -1.3
MSX1P28360 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC6.95□□□□□ -1.3
MSX1P28360 SUGT1P1-201ENST00000379514 476 ntBASIC6.95□□□□□ -1.3
MSX1P28360 RNU6-809P-201ENST00000384461 107 ntBASIC6.95□□□□□ -1.3
MSX1P28360 TMSB4XP8-201ENST00000402089 135 ntBASIC6.95□□□□□ -1.3
MSX1P28360 RN7SKP32-201ENST00000410167 303 ntBASIC6.95□□□□□ -1.3
MSX1P28360 AL359704.1-201ENST00000411586 781 ntBASIC6.95□□□□□ -1.3
MSX1P28360 OR9R1P-201ENST00000412200 877 ntBASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms