Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 NEPNP-201ENST00000404786 1371 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC079097.1-201ENST00000512187 1399 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 GPS2P1-201ENST00000411761 986 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 SLC20A1P1-201ENST00000413906 956 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 MGAT2P2-201ENST00000427194 797 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 NANOGP9-201ENST00000439890 892 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC073465.2-201ENST00000440938 498 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 RPL5P25-201ENST00000441148 775 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 SETP20-201ENST00000457046 852 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 EIF2S2P4-201ENST00000461070 984 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC084754.1-201ENST00000463466 464 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 OR2A1-AS1-202ENST00000467944 422 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 RN7SL583P-201ENST00000475692 287 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC091544.1-201ENST00000484702 348 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 FABP5P6-201ENST00000510588 409 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 GAPDHP71-201ENST00000511530 1003 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 SCARNA18.1-201ENST00000516330 83 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC021678.3-201ENST00000517893 476 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 OR4A17P-201ENST00000526032 904 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC079064.1-201ENST00000528365 362 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 OR5AM1P-201ENST00000532136 1032 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC134349.2-201ENST00000535136 910 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 MYL6-213ENST00000549017 502 ntTSL 3 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 CKS1BP1-201ENST00000555221 240 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL136520.1-202ENST00000555494 763 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 LINC00556-201ENST00000569603 412 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC010503.3-201ENST00000594355 540 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AP000769.2-201ENST00000602344 396 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL133247.2-201ENST00000603236 482 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC108738.1-201ENST00000603703 237 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL022394.1-201ENST00000606979 292 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL136131.3-201ENST00000607600 188 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC253576.2-201ENST00000618815 580 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AL359715.3-201ENST00000569267 2123 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL603750.1-201ENST00000624216 1717 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 TCP11X1-202ENST00000622971 1372 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC003985.2-201ENST00000562268 1669 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC112255.1-201ENST00000624070 2493 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC092681.1-201ENST00000297369 291 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 MTHFD2P5-201ENST00000320415 844 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 SNORA64.1-201ENST00000362600 132 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL356057.1-202ENST00000402263 756 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 PRUNEP1-201ENST00000425846 705 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms