Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC008958.1-201ENST00000511047 682 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC017104.4-201ENST00000636283 1592 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 TMCC1-201ENST00000393238 5992 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 RNA5-8SP5-201ENST00000365304 152 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC027807.1-201ENST00000559921 996 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 RAPGEF5-212ENST00000620335 5506 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 TMEM236-201ENST00000377495 5464 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 RNA5SP90-201ENST00000364801 99 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 RNA5SP397-201ENST00000391323 118 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC116036.1-201ENST00000412199 367 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 NUTF2P3-201ENST00000448540 384 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AL121932.1-201ENST00000605542 214 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AL133481.2-203ENST00000607558 139 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 AC007497.1-201ENST00000610421 561 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 DCN-218ENST00000551354 2924 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 USP24P1-201ENST00000433802 779 ntBASIC4.87□□□□□ -1.63
VPS13AQ96RL7 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 AC138907.8-201ENST00000623981 2256 ntBASIC4.87□□□□□ -1.63
VPS13AQ96RL7 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 CYCSP10-201ENST00000417973 294 ntBASIC4.87□□□□□ -1.63
VPS13AQ96RL7 PRPF38AP1-201ENST00000451976 933 ntBASIC4.87□□□□□ -1.63
VPS13AQ96RL7 AC024451.1-201ENST00000508013 779 ntBASIC4.87□□□□□ -1.63
VPS13AQ96RL7 OR8R1P-201ENST00000543943 764 ntBASIC4.87□□□□□ -1.63
VPS13AQ96RL7 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS13AQ96RL7 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC007114.2-201ENST00000576014 4281 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC073365.1-203ENST00000641055 1992 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 SNORA11.1-201ENST00000408133 129 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AL161722.2-201ENST00000434731 981 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 HCG14-201ENST00000444986 413 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC073358.1-201ENST00000505671 684 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 MTCO1P49-201ENST00000523429 802 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC079298.1-201ENST00000625026 1619 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AP001029.2-203ENST00000589795 4910 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms