Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC027243.2-201ENST00000602530 724 ntBASIC5.82□□□□□ -1.48
CCDC112Q8NEF3 AL031601.1-201ENST00000605702 394 ntBASIC5.82□□□□□ -1.48
CCDC112Q8NEF3 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
CCDC112Q8NEF3 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC112Q8NEF3 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
CCDC112Q8NEF3 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC112Q8NEF3 AC106872.5-201ENST00000508856 1416 ntBASIC5.82□□□□□ -1.48
CCDC112Q8NEF3 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC112Q8NEF3 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC006210.2-201ENST00000367074 1545 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 RNA5SP131-201ENST00000365452 119 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 RN7SKP229-201ENST00000410465 302 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 HMGN1P36-201ENST00000446623 298 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 MTND6P2-201ENST00000512226 524 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 RNA5SP303-201ENST00000516192 130 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 MRPS16P1-201ENST00000523462 412 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 HMGB1P42-201ENST00000532126 553 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 DPPA2P4-201ENST00000563717 878 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AP001496.3-201ENST00000580230 913 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC007448.1-201ENST00000582714 234 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC018695.5-201ENST00000605872 315 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 AC241377.1-201ENST00000619797 406 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 NEAT1-202ENST00000501122 22743 ntBASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC112Q8NEF3 NEPNP-201ENST00000404786 1371 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 TMSB4XP2-201ENST00000335179 210 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 RNU1-150P-201ENST00000362491 162 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 RN7SKP6-201ENST00000364795 319 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 MIR589-201ENST00000385238 99 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 MIR143-201ENST00000385300 106 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 RNA5SP487-201ENST00000410186 122 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 OR6D1P-201ENST00000436165 939 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 NDUFS5P5-201ENST00000437256 321 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 RPL35AP21-201ENST00000437667 333 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AL031584.1-201ENST00000447169 754 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 NOP56P2-201ENST00000447491 769 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 BTF3P6-201ENST00000448054 499 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AL035090.1-201ENST00000454835 332 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 RN7SL717P-201ENST00000478343 297 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 NPM1P29-201ENST00000483112 803 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 RPL7L1P4-201ENST00000513004 707 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 SETP1-201ENST00000556014 845 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 OR8G3P-202ENST00000641572 1255 ntBASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms